HHsearch alignment for GI: 254780916 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=955.07 Aligned_cols=452 Identities=29% Similarity=0.443 Sum_probs=410.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 352883899869989999999999988988999893--799998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
T Consensus 1 ~~~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI 80 (464)
T COG2204 1 MMMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVI 80 (464)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 98768789992978999999999997697489858999999998628999899816789996699999999638999889
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222222222-----21111111122222222222222223
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQE-----NEHCALDSLIAVSPAMIQVVDLARKA 159 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~-----~~~~~~~~LiG~S~~m~~v~~~i~~~ 159 (482)
T Consensus 81 ~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kv 160 (464)
T COG2204 81 VMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKV 160 (464)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98288999999999855703332189999999999999998765322210000013455677520699999999999998
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 443204887327774367999999842675433210123465542100243311255-5532211100123446671475
Q gi|254780916|r 160 GDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-LQTKNSAQFLGKFIEANGGTIV 238 (482)
Q Consensus 160 a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~~~~~~~~~~g~~~~a~~Gtl~ 238 (482)
T Consensus 161 A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLf 240 (464)
T COG2204 161 APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLF 240 (464)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEE
T ss_conf 47799789977898758999999986074458992563346489888777761456567677643457615773796587
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16642001889998888776420011235532123431565214332111111233379998865433446778774422
Q gi|254780916|r 239 LEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSED 318 (482)
Q Consensus 239 l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eD 318 (482)
T Consensus 241 LDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 241 LDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred EECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHH
T ss_conf 32311099999999999987070673588860000169996057789999881973788886523311048762236200
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 22556677764101122333321111100012233898689999999999874389810688954542124454322343
Q gi|254780916|r 319 IPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHT 398 (482)
Q Consensus 319 I~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~ 398 (482)
T Consensus 321 Ip~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~~~~~---~~----- 392 (464)
T COG2204 321 IPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPLEILA---PA----- 392 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC---CC-----
T ss_conf 7999999999999980999888799999999738998189999999999985178654665441420035---42-----
Q ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 22222233444321000000001123444543258999999999999999828727899978489988999999981888
Q gi|254780916|r 399 ETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIE 478 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi~ 478 (482)
T Consensus 393 ----~~~~-----~~~~---~~~--~~~~-~~l~~~~~~~Er~~I~~aL~~~~g~~~~aA~~LGi~R~tLy~Klk~~g~~ 457 (464)
T COG2204 393 ----AEAL-----AGPA---GEA--ALPG-LPLGEALAEVERQLILQALERTGGNKSEAAERLGISRKTLYRKLKEYGID 457 (464)
T ss_pred ----CCCC-----CCCC---CCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf ----2233-----4445---655--4555-42788999999999999999968989999999799888999999994898
Q ss_pred CCC
Q ss_conf 144
Q gi|254780916|r 479 VDS 481 (482)
Q Consensus 479 ~d~ 481 (482)
T Consensus 458 ~~~ 460 (464)
T COG2204 458 RSD 460 (464)
T ss_pred CCC
T ss_conf 344