HHsearch alignment for GI: 254780916 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.12 E-value=3.8e-10 Score=91.34 Aligned_cols=204 Identities=20% Similarity=0.212 Sum_probs=133.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 11111112222222222222222344320488732777436799999984267543321012346554210024331125
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV 215 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~ 215 (482)
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~-----~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~gvkdl-------- 89 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEA-----GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSGVKDL-------- 89 (436)
T ss_pred HCCHHHHHCCCCHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCHHHH--------
T ss_conf 55718661899438999964-----998605777899988889999998761---77669951523467999--------
Q ss_pred CCCCCCCCCCCCCCCCC------C-CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 55532211100123446------6-7147516642001889998888776420011235532123431565214332111
Q gi|254780916|r 216 DLQTKNSAQFLGKFIEA------N-GGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 216 ~~~~~~~~~~~g~~~~a------~-~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
T Consensus 90 ----------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i-------------ilIGATTENPsF~ 146 (436)
T COG2256 90 ----------REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI-------------ILIGATTENPSFE 146 (436)
T ss_pred ----------HHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEE-------------EEEECCCCCCCEE
T ss_conf ----------99999999987258834998722533374456551033248868-------------9996267898714
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11123337999886543344677877442222556677764101122333321111100012233898689999999999
Q gi|254780916|r 289 VKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 289 ~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~ 368 (482)
T Consensus 147 ln~AL-----lSR~~--vf~lk~L~--~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s-~GD~R~aLN~LE~~ 216 (436)
T COG2256 147 LNPAL-----LSRAR--VFELKPLS--SEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS-NGDARRALNLLELA 216 (436)
T ss_pred ECHHH-----HHHHH--EEEEECCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 03888-----61104--15651699--89999999999865413777655668889999999862-86199998899999
Q ss_pred HHHCCCC-CCCHHHHHHHHCC
Q ss_conf 8743898-1068895454212
Q gi|254780916|r 369 VIGLKDS-HLTEDRFVLLLSR 388 (482)
Q Consensus 369 ~i~~~~~-~i~~~~~~~~l~~ 388 (482)
T Consensus 217 ~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 217 ALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred HHHCCCCCCCCHHHHHHHHHH
T ss_conf 986277752479999999865