HHsearch alignment for GI: 254780916 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=97.16 E-value=0.0015 Score=44.75 Aligned_cols=212 Identities=17% Similarity=0.226 Sum_probs=118.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CCCCCCCC-CCCCCCCCC----
Q ss_conf 111111112222222222222222344320488732777436799999984267----54332101-234655421----
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK----RAFFPFFI-VNCGMIDQD---- 205 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~----r~~~~fi~-v~c~~~~~~---- 205 (482)
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~-~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALE-NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHH-HCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 83007776364899999999998-08423336513777767104999999995688987777225316668651488641
Q ss_pred CCHHHHHCCCCC-CCCCCCCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 002433112555-5322111001234-------46671475166420018899988887764200112355321234315
Q gi|254780916|r 206 KIEKFLFGDVDL-QTKNSAQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRL 277 (482)
Q Consensus 206 ~~e~~lFG~~~~-~~~~~~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 277 (482)
T Consensus 90 viE------iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-----------P~hV~F 152 (515)
T COG2812 90 VIE------IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-----------PSHVKF 152 (515)
T ss_pred CHH------HHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCC-----------CCCEEE
T ss_conf 011------364445486799999987246886666418998318764378888875111368-----------667489
Q ss_pred EEECCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65214332----11111123337999886543344677877442222556677764101122333321111100012233
Q gi|254780916|r 278 IFLTEKNL----LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP 353 (482)
Q Consensus 278 Ia~t~~~L----~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~ 353 (482)
T Consensus 153 IlATTe~~Kip~TIlSRcq~f------~fkri~---------~~~I~~~----L~~i~~~E~---I~~e~~aL~~ia~-~ 209 (515)
T COG2812 153 ILATTEPQKIPNTILSRCQRF------DFKRLD---------LEEIAKH----LAAILDKEG---INIEEDALSLIAR-A 209 (515)
T ss_pred EEECCCCCCCCHHHHHCCCCC------CCCCCC---------HHHHHHH----HHHHHHHCC---CCCCHHHHHHHHH-H
T ss_conf 985388676840455212202------225799---------9999999----999987448---7547999999999-8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 89868999999999987438981068895454212
Q gi|254780916|r 354 WIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 354 WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~ 388 (482)
T Consensus 210 a~Gs~RDalslLDq~i~~~~-~~It~~~v~~~lG~ 243 (515)
T COG2812 210 AEGSLRDALSLLDQAIAFGE-GEITLESVRDMLGL 243 (515)
T ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCC
T ss_conf 28974567778999997067-76569999999688