HHsearch alignment for GI: 254780916 and conserved domain: COG3279
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].
Probab=98.99 E-value=1e-09 Score=88.31 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=94.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 883899869989999999999988-988999-893--7999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVFI-VNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~~-a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf 80 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80 (244)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf 98517714767679999999887442111133123031788876025776999723765244999998615698853999
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 92689999999888505743222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
T Consensus 81 vt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 81 VTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98615--4323331334667742854268999999998887