HHsearch alignment for GI: 254780916 and conserved domain: COG3279

>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].
Probab=98.99  E-value=1e-09  Score=88.31  Aligned_cols=115  Identities=14%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             883899869989999999999988-988999-893--7999986089989999785469888999999998578983999
Q gi|254780916|r   10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVFI-VNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV   85 (482)
Q Consensus        10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~~-a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi   85 (482)
T Consensus         1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf   80 (244)
T COG3279           1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF   80 (244)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf             98517714767679999999887442111133123031788876025776999723765244999998615698853999


Q ss_pred             EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             92689999999888505743222222222222222222222
Q gi|254780916|r   86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE  126 (482)
Q Consensus        86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~  126 (482)
T Consensus        81 vt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~  119 (244)
T COG3279          81 VTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY  119 (244)
T ss_pred             EEEHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             98615--4323331334667742854268999999998887