HHsearch alignment for GI: 254780916 and conserved domain: COG3283
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=551.78 Aligned_cols=313 Identities=29% Similarity=0.506 Sum_probs=282.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 21111111122222222222222223443204887327774367999999842675433210123465542100243311
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG 213 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG 213 (482)
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG 277 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFG 277 (511)
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 75424477873039999999999865403787687448886188999987443845589736764477966676777735
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 25555322111001234466714751664200188999888877642001123553212343156521433211111123
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV 293 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~ 293 (482)
T Consensus 278 ~apg----~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~ 353 (511)
T COG3283 278 HAPG----DEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGK 353 (511)
T ss_pred CCCC----CCCCCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCC
T ss_conf 6888----777634634026974885003324998999999986277600037754578778999616666999986372
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 33799988654334467787744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r 294 FRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373 (482)
Q Consensus 294 fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~ 373 (482)
T Consensus 354 fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 354 FREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred HHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 58878877501342388500065210689999999999975899876687899999877999609999999999999851
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98106889545421244543223432222223344432100000000112344454325899999999999999982872
Q gi|254780916|r 374 DSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ 453 (482)
Q Consensus 374 ~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn 453 (482)
T Consensus 434 g~~l~i~~i~Lp~~~~~~---------------------~~~~~~~~g--------sLdei~~~fE~~VL~rly~~yP-S 483 (511)
T COG3283 434 GYELRIEDILLPDYDAAT---------------------VVGEDALEG--------SLDEIVSRFERSVLTRLYRSYP-S 483 (511)
T ss_pred CCCCCHHHCCCCCCCCCC---------------------CCCHHHCCC--------CHHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 674443200467755343---------------------452133028--------7999999999999999998597-4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 789997848998899999998188814
Q gi|254780916|r 454 MSEVARRLGIGRSTLYRKIREYNIEVD 480 (482)
Q Consensus 454 ~~~aA~~LGIsR~tL~rKlk~~gi~~d 480 (482)
T Consensus 484 tRkLAkRLgvSHTaIAnKLRqyGi~~~ 510 (511)
T COG3283 484 TRKLAKRLGVSHTAIANKLRQYGIGQK 510 (511)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 889999858737999989998277778