HHsearch alignment for GI: 254780916 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.85  E-value=2.9e-21  Score=169.91  Aligned_cols=126  Identities=16%  Similarity=0.187  Sum_probs=113.4

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH--HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             35288389986998999999999998898899989379--9998608998999978546988899999999857898399
Q gi|254780916|r    7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSD--LSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII   84 (482)
Q Consensus         7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~a--l~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI   84 (482)
T Consensus         1 ~~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI   80 (202)
T COG4566           1 MPREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI   80 (202)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf             99887689976848899999999983895366504799998306678897699855788885089999999539998879


Q ss_pred             EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             992689999999888505743222222222222222222222222222
Q gi|254780916|r   85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQ  132 (482)
Q Consensus        85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~  132 (482)
T Consensus        81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~  128 (202)
T COG4566          81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRA  128 (202)
T ss_pred             EEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             982788728999999742156774788548999999999998888887