HHsearch alignment for GI: 254780916 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.85 E-value=2.9e-21 Score=169.91 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=113.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH--HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 35288389986998999999999998898899989379--9998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSD--LSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~a--l~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
T Consensus 1 ~~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 1 MPREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 99887689976848899999999983895366504799998306678897699855788885089999999539998879
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 992689999999888505743222222222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQ 132 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~ 132 (482)
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~ 128 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRA 128 (202)
T ss_pred EEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 982788728999999742156774788548999999999998888887