HHsearch alignment for GI: 254780916 and conserved domain: COG4567

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].

Probab=99.63  E-value=3.5e-15  Score=126.92  Aligned_cols=116  Identities=10%  Similarity=0.170  Sum_probs=105.2

Q ss_pred             CCCCCC-EEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             352883-899869989999999999988988999893--79999860899899997854698889999999985789839
Q gi|254780916|r    7 LDRHKR-VLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPI   83 (482)
Q Consensus         7 m~~~~r-ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipv   83 (482)
T Consensus         5 ~~~pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~ri   84 (182)
T COG4567           5 MIGPDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRI   84 (182)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEE
T ss_conf             14887605896187699999999986068625761449999999851798528898640688746899999824976438


Q ss_pred             EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999268999999988850574322222222222222222
Q gi|254780916|r   84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIIC  122 (482)
Q Consensus        84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~  122 (482)
T Consensus        85 vvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~  123 (182)
T COG4567          85 VVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR  123 (182)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             988451179999999986245540797776899999860