HHsearch alignment for GI: 254780916 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=98.98 E-value=1e-08 Score=81.22 Aligned_cols=253 Identities=17% Similarity=0.235 Sum_probs=153.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11111111222222222222222234---432048873277743679999998426754332101234655421002433
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
T Consensus 20 RP~~l~efiGQ~~i~~~L~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~---~~~~~tsGP~lek~------ 90 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALEKA------ 90 (328)
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---CCCEECCCCCCCCH------
T ss_conf 988576635959999999999999996499988057658899889999999999868---88156245001674------
Q ss_pred HCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC----CCC---CCCEEEEECCC
Q ss_conf 112555532211100123446-6714751664200188999888877642001123553----212---34315652143
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEA-NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRG----AIR---LDVRLIFLTEK 283 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a-~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~----~~~---~~~RiIa~t~~ 283 (482)
T Consensus 91 -----------~DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr 159 (328)
T PRK00080 91 -----------GDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred -----------HHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCC
T ss_conf -----------789999960887876765065324888998857987752345786478653245558998347401367
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321111112333799988654334467787744-----------222255667776410112233332111110001223
Q gi|254780916|r 284 NLLPQVKSHVFRKDLYYRISVFLINISTLRSRS-----------EDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY 352 (482)
Q Consensus 284 ~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~-----------eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y 352 (482)
T Consensus 160 ~-------g~L--------------s~PLrdRFGi~~~l~~Y~~eeL~~I----i~rsa~~l~i---~i~~~~~~eIA~r 211 (328)
T PRK00080 160 A-------GLL--------------TSPLRDRFGIVQRLEFYTVEELEKI----VKRSARILGI---EIDEEGALEIARR 211 (328)
T ss_pred C-------CCC--------------CHHHHHHCCCEEEECCCCHHHHHHH----HHHHHHHHCC---CCCHHHHHHHHHH
T ss_conf 6-------657--------------7678975793366345899999999----9999998398---8789999999986
Q ss_pred CCCCCHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 38986899999999998---743898106889545421244543223432222223344432100000000112344454
Q gi|254780916|r 353 PWIDNVQELKNILLRAV---IGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQD 429 (482)
Q Consensus 353 ~WPGNvREL~n~i~r~~---i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
T Consensus 212 SR-GTPRiAnrLLrRvrDfa~v~~~~~I~~~~~~~aL~~l~ID~------------------------------------ 254 (328)
T PRK00080 212 SR-GTPRIANRLLRRVRDFAQVKGDGIITREIADKALDMLGVDE------------------------------------ 254 (328)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC------------------------------------
T ss_conf 38-98399999999999999983799659999999999569863------------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 325899999999999999982872---7899978489988999999981
Q gi|254780916|r 430 GEVRRLSDIEKEIIGLAMKLYRAQ---MSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 430 ~~~~~l~e~E~~~I~~aL~~~~Gn---~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
T Consensus 255 ---~GLd~~Dr~~L~~l~~~f~GgPVGl~tLAa~lge~~~TIEdv~EPy 300 (328)
T PRK00080 255 ---LGLDEMDRKYLLTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPY 300 (328)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf ---4899889999999998529977009999999779821688875189