HHsearch alignment for GI: 254780916 and conserved domain: PRK05428
>PRK05428 HPr kinase/phosphorylase; Provisional.
Probab=92.76 E-value=0.18 Score=30.06 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=53.2
Q ss_pred HHHHHHHH-CCCCCEEEEECCC-CHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999985-7898399992689-99999988850-574322222222222222222222222222222111111112222
Q gi|254780916|r 70 ILKNIVDK-IPIVPIIVQTTQD-NIKILNCFLYN-RISKFFLNLVSRKQLCDSIICALREGVVPSQENEHCALDSLIAVS 146 (482)
Q Consensus 70 ll~~i~~~-~p~ipvIiiT~~~-~~~~~~~a~~~-g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S 146 (482)
T Consensus 71 ~~~~~~~l~~~~~P~iIvt~~~~~~~~l~~~a~~~~ipl-l~t~~~ts~~i~~l~~~L~~~lAp~~-~~HGvlvdV---- 144 (308)
T PRK05428 71 RKERLKKLFSFEPPCIIVTRGLEPPEELLEAAKEAGIPL-LRTKLSTTRLISKLTNYLDRKLAPRT-SVHGVLVDV---- 144 (308)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EECCCCHHHHHHHHHHHHHHHCCCCE-EEEEEEEEE----
T ss_conf 999999985769978999799999999999999849958-98287599999999999998608747-886589999----
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 22222222222234432048873277743679999998426754332101
Q gi|254780916|r 147 PAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFI 196 (482)
Q Consensus 147 ~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~ 196 (482)
T Consensus 145 ---------------~G~GVLI~G~SGiGKSE~aLeLI~RG----HrLVA 175 (308)
T PRK05428 145 ---------------YGIGVLITGESGIGKSETALELIKRG----HRLVA 175 (308)
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHHHCC----CEEEE
T ss_conf ---------------44489997588888128999999849----93670