HHsearch alignment for GI: 254780916 and conserved domain: PRK05574
>PRK05574 holA DNA polymerase III subunit delta; Reviewed.
Probab=96.60 E-value=0.074 Score=32.76 Aligned_cols=267 Identities=14% Similarity=0.115 Sum_probs=127.3
Q ss_pred CCCEEE-EEECCCCCHHHHHHHHHHH-CCC--CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 432048-8732777436799999984-267--543321012346554210024331125555322111001234466714
Q gi|254780916|r 161 DCAIPI-MIQGEFGVGKKRLSRFIHE-SGK--RAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~v-li~Ge~GtGK~~~A~~iH~-~s~--r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt 236 (482)
T Consensus 13 k~l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~~~~~l~~~~------------~t~slf~--~krl 78 (336)
T PRK05574 13 KGLAPVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSETDWDDVLEAC------------QSLPLFS--DRKL 78 (336)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHH------------CCCCCCC--CCEE
T ss_conf 7898679998586999999999999986077865305899716869999999986------------4899778--9759
Q ss_pred EEECCCCHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 751664200188----9998888776420011235532123431565214332111111233379998865--4334467
Q gi|254780916|r 237 IVLEEPDALPLA----VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRIS--VFLINIS 310 (482)
Q Consensus 237 l~l~ei~~L~~~----~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~--~~~i~iP 310 (482)
T Consensus 79 Viv~~~~~~~~k~~~~~l~~l~~~l~~~---------~~~~~l-vli~~~~~~d~~~k~~----k~~k~l~~~~~~i~~~ 144 (336)
T PRK05574 79 VELRLPEGLTGKKGEEALKRLEAYLENP---------LPHTDL-LLLAPLPKLDKRKEKS----AWFKALKKKAVVVEAQ 144 (336)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCC---------CCCCEE-EEEEECCCCCHHHHHH----HHHHHHHHCEEEEEEC
T ss_conf 9998887665311379999999987079---------999769-9998778633688889----9999998480799806
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 78774422225566777641011223333211111000122338986899999999998743898106889545421244
Q gi|254780916|r 311 TLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 311 pLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
T Consensus 145 ~~~~--~~l~~~i~~~~~~----~g~---~i~~~a~~~L~~~-~g~dl~~l~~EleKL~ly~~~~~It~~dV~~~v~~~~ 214 (336)
T PRK05574 145 TPKE--AELPQWIQQRLKQ----QGL---RIDAAALQLLAER-VEGNLLALAQEIEKLALLYPDGKITLEDVEEAVPDSA 214 (336)
T ss_pred CCCH--HHHHHHHHHHHHH----CCC---CCCHHHHHHHHHH-HHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 9998--9999999999998----499---9898999999997-2113999999999999837888878999999861643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
Q ss_conf 543223432222223344432100000000112344454325899-9999999999999828727899978489988999
Q gi|254780916|r 391 KKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRL-SDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLY 469 (482)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~ 469 (482)
T Consensus 215 ~~~~f~L~dai~~--~~~~~al~~l~~l~~~~~~~---~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i~~~~~~ 289 (336)
T PRK05574 215 RFDVFDLVDAILA--GKIARALRILDGLRLEGEEP---IKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRVWPYRRK 289 (336)
T ss_pred CCCHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHH
T ss_conf 3567999999987--89999999999999779972---999999999999999999998769999999988399999999
Q ss_pred H
Q ss_conf 9
Q gi|254780916|r 470 R 470 (482)
Q Consensus 470 r 470 (482)
T Consensus 290 ~ 290 (336)
T PRK05574 290 L 290 (336)
T ss_pred H
T ss_conf 9