HHsearch alignment for GI: 254780916 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.68 E-value=1.1e-07 Score=73.85 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222211111111222-2-222222222222344-3204887327774367999999842675433210123465542100
Q gi|254780916|r 131 SQENEHCALDSLIAV-S-PAMIQVVDLARKAGD-CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 131 ~~~~~~~~~~~LiG~-S-~~m~~v~~~i~~~a~-~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~ 207 (482)
T Consensus 10 ~~l~~~~tfdnFi~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~- 88 (234)
T PRK05642 10 VRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG- 88 (234)
T ss_pred CCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-
T ss_conf 9999977730357187599999999987606787788389988999988999999999998079967997899987544-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 243311255553221110012344667147516642001--889998888776420011235532123431565214332
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL 285 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L 285 (482)
T Consensus 89 -~~~~--------------~~l~~~--d~l~IDDi~~i~g~~~~e~~lF~l~N~~----------~~~~~~llits~~~P 141 (234)
T PRK05642 89 -PELL--------------DNLEQY--ELVCIDDLDVIAGKADWEEALFHLFNRL----------RDSGRRLLLAASKSP 141 (234)
T ss_pred -HHHH--------------HHHHHC--CEEEEECHHHHCCCHHHHHHHHHHHHHH----------HHCCCEEEEECCCCH
T ss_conf -9998--------------624227--9898936455468859999999999999----------983995999578795
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111111233379998865-4334467787--7442222556677764101122333321111100012233898689999
Q gi|254780916|r 286 LPQVKSHVFRKDLYYRIS-VFLINISTLR--SRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELK 362 (482)
Q Consensus 286 ~~~~~~g~fr~dLy~rL~-~~~i~iPpLR--eR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~ 362 (482)
T Consensus 142 ~~l~---~~l~DL~SRl~~~~~~~i~~l~d~~~~~-------i-L~~~a~~rg---i~l~~~v~~yl~~r-~~R~~~~L~ 206 (234)
T PRK05642 142 RELP---VKLPDLKSRLTLALVFQMRGLSDEDKLR-------A-LQLRASRRG---LHLTDEVGHFILTR-GTRSMSALF 206 (234)
T ss_pred HHHC---CCHHHHHHHHHCCCEEEECCCCHHHHHH-------H-HHHHHHHCC---CCCCHHHHHHHHHH-CCCCHHHHH
T ss_conf 5523---0016799999578127514899899999-------9-999977546---89998999999997-358899999
Q ss_pred HHHHHHHH--HCCCCCCCHHHHH
Q ss_conf 99999987--4389810688954
Q gi|254780916|r 363 NILLRAVI--GLKDSHLTEDRFV 383 (482)
Q Consensus 363 n~i~r~~i--~~~~~~i~~~~~~ 383 (482)
T Consensus 207 ~~l~~Ld~~sl~~kr~iTiplvk 229 (234)
T PRK05642 207 DLLERLDQASLQAQRKLTIPFLK 229 (234)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999999838999999999