HHsearch alignment for GI: 254780916 and conserved domain: PRK05642

>PRK05642 DNA replication initiation factor; Validated.
Probab=98.68  E-value=1.1e-07  Score=73.85  Aligned_cols=210  Identities=13%  Similarity=0.119  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222211111111222-2-222222222222344-3204887327774367999999842675433210123465542100
Q gi|254780916|r  131 SQENEHCALDSLIAV-S-PAMIQVVDLARKAGD-CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI  207 (482)
Q Consensus       131 ~~~~~~~~~~~LiG~-S-~~m~~v~~~i~~~a~-~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~  207 (482)
T Consensus        10 ~~l~~~~tfdnFi~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~-   88 (234)
T PRK05642         10 VRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG-   88 (234)
T ss_pred             CCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-
T ss_conf             9999977730357187599999999987606787788389988999988999999999998079967997899987544-


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             243311255553221110012344667147516642001--889998888776420011235532123431565214332
Q gi|254780916|r  208 EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL  285 (482)
Q Consensus       208 e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L  285 (482)
T Consensus        89 -~~~~--------------~~l~~~--d~l~IDDi~~i~g~~~~e~~lF~l~N~~----------~~~~~~llits~~~P  141 (234)
T PRK05642         89 -PELL--------------DNLEQY--ELVCIDDLDVIAGKADWEEALFHLFNRL----------RDSGRRLLLAASKSP  141 (234)
T ss_pred             -HHHH--------------HHHHHC--CEEEEECHHHHCCCHHHHHHHHHHHHHH----------HHCCCEEEEECCCCH
T ss_conf             -9998--------------624227--9898936455468859999999999999----------983995999578795


Q ss_pred             CCCCCHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             111111233379998865-4334467787--7442222556677764101122333321111100012233898689999
Q gi|254780916|r  286 LPQVKSHVFRKDLYYRIS-VFLINISTLR--SRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELK  362 (482)
Q Consensus       286 ~~~~~~g~fr~dLy~rL~-~~~i~iPpLR--eR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~  362 (482)
T Consensus       142 ~~l~---~~l~DL~SRl~~~~~~~i~~l~d~~~~~-------i-L~~~a~~rg---i~l~~~v~~yl~~r-~~R~~~~L~  206 (234)
T PRK05642        142 RELP---VKLPDLKSRLTLALVFQMRGLSDEDKLR-------A-LQLRASRRG---LHLTDEVGHFILTR-GTRSMSALF  206 (234)
T ss_pred             HHHC---CCHHHHHHHHHCCCEEEECCCCHHHHHH-------H-HHHHHHHCC---CCCCHHHHHHHHHH-CCCCHHHHH
T ss_conf             5523---0016799999578127514899899999-------9-999977546---89998999999997-358899999


Q ss_pred             HHHHHHHH--HCCCCCCCHHHHH
Q ss_conf             99999987--4389810688954
Q gi|254780916|r  363 NILLRAVI--GLKDSHLTEDRFV  383 (482)
Q Consensus       363 n~i~r~~i--~~~~~~i~~~~~~  383 (482)
T Consensus       207 ~~l~~Ld~~sl~~kr~iTiplvk  229 (234)
T PRK05642        207 DLLERLDQASLQAQRKLTIPFLK  229 (234)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             99999999999838999999999