HHsearch alignment for GI: 254780916 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=97.85 E-value=0.00016 Score=51.63 Aligned_cols=223 Identities=11% Similarity=0.133 Sum_probs=125.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC----C-CCCCCCCCCCCCCH
Q ss_conf 211111111222222222222222234432048873277743679999998426754332----1-01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFP----F-FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~----f-i~v~c~~~~~~~~e 208 (482)
T Consensus 10 ~rp~~f~~~~gq~~~~~~l~~~~~~-~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~ 88 (705)
T PRK05648 10 WRPRSFREMVGQTHVLKALINALDN-QRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFV 88 (705)
T ss_pred HCCCCHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 1787576632819999999999970-986304650078988898999999998677899988978776004666248977
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-3221110012344-------6671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
T Consensus 89 d~~--e~d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktleep-----------p~~v~f~~a 155 (705)
T PRK05648 89 DLI--EVDAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEP-----------PPHVKFLLA 155 (705)
T ss_pred CEE--EECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCCC-----------CCCEEEEEE
T ss_conf 634--4515544788999999985551776774579998426541799999998740479-----------754599984
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
T Consensus 156 tt~~-~k~p-~t~~src~~~~~~~~------------~~~~~~~~l-~~~~~~e~---~~~~~~~~~~~~~~-~~g~~rd 216 (705)
T PRK05648 156 TTDP-QKLP-VTILSRCLQFSLKNM------------SPERVVEHL-SHVLGAEN---VPFEEDALWLLGRA-ADGSMRD 216 (705)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCCC------------CHHHHHHHH-HHHHHHCC---CCCCHHHHHHHHHH-CCCCHHH
T ss_conf 2873-5375-899976643023689------------999999999-99999759---97789999999997-4896777
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 999999998743898106889545421244
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
T Consensus 217 ~ls~~dq~~~~~-~~~~~~~~v~~mlg~~~ 245 (705)
T PRK05648 217 AMSLTDQAIAFG-EGKVLAADVRAMLGTLD 245 (705)
T ss_pred HHHHHHHHHHCC-CCCCCHHHHHHHHCCCC
T ss_conf 999999998606-88407999999858887