HHsearch alignment for GI: 254780916 and conserved domain: PRK05657

>PRK05657 RNA polymerase sigma factor RpoS; Validated.
Probab=92.99  E-value=0.2  Score=29.76  Aligned_cols=49  Identities=29%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHCC---CHHHHHHHHCCCH-----------HHHHHHHHHHCCCCCCC
Q ss_conf             9999999999999998287---2789997848998-----------89999999818881449
Q gi|254780916|r  434 RLSDIEKEIIGLAMKLYRA---QMSEVARRLGIGR-----------STLYRKIREYNIEVDSL  482 (482)
Q Consensus       434 ~l~e~E~~~I~~aL~~~~G---n~~~aA~~LGIsR-----------~tL~rKlk~~gi~~d~~  482 (482)
T Consensus       265 ~L~~REr~II~~RfGL~~~e~~TL~EIg~~lgvSRERVRQIE~~AL~KLR~~l~~~~l~~~~~  327 (328)
T PRK05657        265 ELNDKQREVIERRFGLNGYEAATLEEVAREIGLTRERVRQIQVEALRRLREILQTQGLSKDAL  327 (328)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf             699999999999808899896059999989697999999999999999879999869973424