HHsearch alignment for GI: 254780916 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=94.81 E-value=0.13 Score=31.07 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC----CCCCCCCC-CCCCCCCC----CCCCCHHHHHCCCCCCC
Q ss_conf 22222222223443204887327774367999999842----67543321-01234655----42100243311255553
Q gi|254780916|r 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES----GKRAFFPF-FIVNCGMI----DQDKIEKFLFGDVDLQT 219 (482)
Q Consensus 149 m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~----s~r~~~~f-i~v~c~~~----~~~~~e~~lFG~~~~~~ 219 (482)
T Consensus 8 ~~~~w~~l~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~--i~pe~~~~~ 85 (328)
T PRK05707 8 QQSLWQQLAGRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFV--LEPEEADKP 85 (328)
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEE--EECCCCCCC
T ss_conf 489999999779822046447999867999999999998489999989998888999987589998799--842666776
Q ss_pred CCCCCCCCCC-------CCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2211100123-------4466714751664200188999888877642
Q gi|254780916|r 220 KNSAQFLGKF-------IEANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 220 ~~~~~~~g~~-------~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
T Consensus 86 I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEP 133 (328)
T PRK05707 86 IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP 133 (328)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCC
T ss_conf 979999999999831766789579995028773899999999985078