HHsearch alignment for GI: 254780916 and conserved domain: PRK06647

>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.25  E-value=1e-05  Score=60.02  Aligned_cols=221  Identities=18%  Similarity=0.166  Sum_probs=125.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCC-CCCCCCCCCCCCCH
Q ss_conf             2111111112222222222222222344320488732777436799999984267543----321-01234655421002
Q gi|254780916|r  134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPF-FIVNCGMIDQDKIE  208 (482)
Q Consensus       134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~f-i~v~c~~~~~~~~e  208 (482)
T Consensus        10 YRP~~F~dvvGQe~vv~~L~nai~~-~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~   88 (560)
T PRK06647         10 RRPRDFNSLEGQDFVVETLKHSIEK-NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSL   88 (560)
T ss_pred             HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             2898654403949999999999974-997743663289987899999999999659999998888788788887459998


Q ss_pred             HHHHCCCCCC--CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf             4331125555--3221110012344-------667147516642001889998888776420011235532123431565
Q gi|254780916|r  209 KFLFGDVDLQ--TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIF  279 (482)
Q Consensus       209 ~~lFG~~~~~--~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa  279 (482)
T Consensus        89 D-vi-Eidaasn~~VddIR-~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEP-----------P~~~~FIL  154 (560)
T PRK06647         89 D-VI-EIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-----------PPYIVFIF  154 (560)
T ss_pred             C-EE-EECCCCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCC-----------CCCEEEEE
T ss_conf             7-57-64364548889999-99998632876687069996465655999999999986348-----------87559999


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             21433211111123337999886543344677877442222556677764101122333321111100012233898689
Q gi|254780916|r  280 LTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQ  359 (482)
Q Consensus       280 ~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvR  359 (482)
T Consensus       155 aTte~-~KI~~------TI~SR--CQ~f~Fk~i~~--~~I---~~~-L~~I~~~E~---i~~e~~AL~lIa~~a-~Gs~R  215 (560)
T PRK06647        155 ATTEV-HKLPA------TIKSR--CQHFNFRLLSL--EKI---YEM-LKKVCLEDD---IKYEDEALKWIAYKS-GGSVR  215 (560)
T ss_pred             ECCCH-HHCHH------HHHHH--HEEEECCCCCH--HHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHH
T ss_conf             77994-76848------99965--10410555999--999---999-999998679---887999999999977-89588


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf             999999999874389810688954542124
Q gi|254780916|r  360 ELKNILLRAVIGLKDSHLTEDRFVLLLSRE  389 (482)
Q Consensus       360 EL~n~i~r~~i~~~~~~i~~~~~~~~l~~~  389 (482)
T Consensus       216 Dalslldq~i~~~-~~~i~~~~v~~~lG~~  244 (560)
T PRK06647        216 DAYTLFDQIVSFS-NSDITLEQIRSKMGLT  244 (560)
T ss_pred             HHHHHHHHHHHCC-CCCCCHHHHHHHHCCC
T ss_conf             8999999999607-9977899999986898