HHsearch alignment for GI: 254780916 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.25 E-value=1e-05 Score=60.02 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=125.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCC-CCCCCCCCCCCCCH
Q ss_conf 2111111112222222222222222344320488732777436799999984267543----321-01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPF-FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~f-i~v~c~~~~~~~~e 208 (482)
T Consensus 10 YRP~~F~dvvGQe~vv~~L~nai~~-~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~ 88 (560)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIEK-NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSL 88 (560)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 2898654403949999999999974-997743663289987899999999999659999998888788788887459998
Q ss_pred HHHHCCCCCC--CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 4331125555--3221110012344-------667147516642001889998888776420011235532123431565
Q gi|254780916|r 209 KFLFGDVDLQ--TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIF 279 (482)
Q Consensus 209 ~~lFG~~~~~--~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa 279 (482)
T Consensus 89 D-vi-Eidaasn~~VddIR-~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEP-----------P~~~~FIL 154 (560)
T PRK06647 89 D-VI-EIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-----------PPYIVFIF 154 (560)
T ss_pred C-EE-EECCCCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCC-----------CCCEEEEE
T ss_conf 7-57-64364548889999-99998632876687069996465655999999999986348-----------87559999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 21433211111123337999886543344677877442222556677764101122333321111100012233898689
Q gi|254780916|r 280 LTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQ 359 (482)
Q Consensus 280 ~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvR 359 (482)
T Consensus 155 aTte~-~KI~~------TI~SR--CQ~f~Fk~i~~--~~I---~~~-L~~I~~~E~---i~~e~~AL~lIa~~a-~Gs~R 215 (560)
T PRK06647 155 ATTEV-HKLPA------TIKSR--CQHFNFRLLSL--EKI---YEM-LKKVCLEDD---IKYEDEALKWIAYKS-GGSVR 215 (560)
T ss_pred ECCCH-HHCHH------HHHHH--HEEEECCCCCH--HHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHH
T ss_conf 77994-76848------99965--10410555999--999---999-999998679---887999999999977-89588
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 999999999874389810688954542124
Q gi|254780916|r 360 ELKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 360 EL~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
T Consensus 216 Dalslldq~i~~~-~~~i~~~~v~~~lG~~ 244 (560)
T PRK06647 216 DAYTLFDQIVSFS-NSDITLEQIRSKMGLT 244 (560)
T ss_pred HHHHHHHHHHHCC-CCCCCHHHHHHHHCCC
T ss_conf 8999999999607-9977899999986898