HHsearch alignment for GI: 254780916 and conserved domain: PRK06835

>PRK06835 DNA replication protein DnaC; Validated.
Probab=97.46  E-value=0.00013  Score=52.12  Aligned_cols=143  Identities=13%  Similarity=0.243  Sum_probs=85.7

Q ss_pred             CCCCC--CCCCCC----CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf             22222--222222----222223443204887327774367999999842675433210123465542100243311255
Q gi|254780916|r  143 IAVSP--AMIQVV----DLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD  216 (482)
Q Consensus       143 iG~S~--~m~~v~----~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~  216 (482)
T Consensus       157 ~~~sprenm~~i~~~~~~fi~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~-l~~~~~~~~-  234 (330)
T PRK06835        157 EPISPRENMENILEKCLNFIKNFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIEN-LREIRFNND-  234 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHCCCC-
T ss_conf             898989999999999999987247888866988999998899999999999987994999629999999-999754576-


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf             5532211100123446671475166420--01889998888776420011235532123431565214332111111233
Q gi|254780916|r  217 LQTKNSAQFLGKFIEANGGTIVLEEPDA--LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF  294 (482)
Q Consensus       217 ~~~~~~~~~~g~~~~a~~Gtl~l~ei~~--L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f  294 (482)
T Consensus       235 ---~~~~~~~~~l~~~D--LLIIDDLG~E~~t~~~~~~Lf~iIN~R~~~----~k------~tIITTNl~~~eL~~--~y  297 (330)
T PRK06835        235 ---NDAPELEDLLINCD--LLIIDDLGTESITEFSKTELFNLINKRLLM----NK------KMIISTNLSLEELLK--TY  297 (330)
T ss_pred             ---CCHHHHHHHHHHCC--EEEEECCCCCCCCHHHHHHHHHHHHHHHHC----CC------CEEEECCCCHHHHHH--HH
T ss_conf             ---44899999996189--899721034558868999999999999867----99------979988999899999--87


Q ss_pred             HHHHHHHHHH
Q ss_conf             3799988654
Q gi|254780916|r  295 RKDLYYRISV  304 (482)
Q Consensus       295 r~dLy~rL~~  304 (482)
T Consensus       298 ~eRi~SRi~~  307 (330)
T PRK06835        298 SERIASRLLG  307 (330)
T ss_pred             HHHHHHHHHH
T ss_conf             4899999981