HHsearch alignment for GI: 254780916 and conserved domain: PRK06835
>PRK06835 DNA replication protein DnaC; Validated.
Probab=97.46 E-value=0.00013 Score=52.12 Aligned_cols=143 Identities=13% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCCCC--CCCCCC----CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 22222--222222----222223443204887327774367999999842675433210123465542100243311255
Q gi|254780916|r 143 IAVSP--AMIQVV----DLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD 216 (482)
Q Consensus 143 iG~S~--~m~~v~----~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~ 216 (482)
T Consensus 157 ~~~sprenm~~i~~~~~~fi~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~-l~~~~~~~~- 234 (330)
T PRK06835 157 EPISPRENMENILEKCLNFIKNFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIEN-LREIRFNND- 234 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHCCCC-
T ss_conf 898989999999999999987247888866988999998899999999999987994999629999999-999754576-
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 5532211100123446671475166420--01889998888776420011235532123431565214332111111233
Q gi|254780916|r 217 LQTKNSAQFLGKFIEANGGTIVLEEPDA--LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 217 ~~~~~~~~~~g~~~~a~~Gtl~l~ei~~--L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
T Consensus 235 ---~~~~~~~~~l~~~D--LLIIDDLG~E~~t~~~~~~Lf~iIN~R~~~----~k------~tIITTNl~~~eL~~--~y 297 (330)
T PRK06835 235 ---NDAPELEDLLINCD--LLIIDDLGTESITEFSKTELFNLINKRLLM----NK------KMIISTNLSLEELLK--TY 297 (330)
T ss_pred ---CCHHHHHHHHHHCC--EEEEECCCCCCCCHHHHHHHHHHHHHHHHC----CC------CEEEECCCCHHHHHH--HH
T ss_conf ---44899999996189--899721034558868999999999999867----99------979988999899999--87
Q ss_pred HHHHHHHHHH
Q ss_conf 3799988654
Q gi|254780916|r 295 RKDLYYRISV 304 (482)
Q Consensus 295 r~dLy~rL~~ 304 (482)
T Consensus 298 ~eRi~SRi~~ 307 (330)
T PRK06835 298 SERIASRLLG 307 (330)
T ss_pred HHHHHHHHHH
T ss_conf 4899999981