HHsearch alignment for GI: 254780916 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=98.44 E-value=9.6e-07 Score=67.28 Aligned_cols=207 Identities=15% Similarity=0.086 Sum_probs=118.3
Q ss_pred CCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCEE-EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 22111111112-2222-222222222223443204-88732777436799999984267543321012346554210024
Q gi|254780916|r 133 ENEHCALDSLI-AVSP-AMIQVVDLARKAGDCAIP-IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEK 209 (482)
Q Consensus 133 ~~~~~~~~~Li-G~S~-~m~~v~~~i~~~a~~~~~-vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~ 209 (482)
T Consensus 9 ~~~~~tfdnF~~~~n~~~~~~l~~---~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~-------~ 78 (229)
T PRK06893 9 QIDDETLDNFYSDNNLLLLDSLRK---NFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK-------S 78 (229)
T ss_pred CCCCCCHHCCCCCCHHHHHHHHHH---HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHH-------H
T ss_conf 998665431546874999999997---550246987999899999889999999999997189859997377-------5
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEECCCCCC
Q ss_conf 3311255553221110012344667147516642001--88999888877642001123553212343-15652143321
Q gi|254780916|r 210 FLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDV-RLIFLTEKNLL 286 (482)
Q Consensus 210 ~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~-RiIa~t~~~L~ 286 (482)
T Consensus 79 ~~~~~------~~l--~-~l~--~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~----------~~~~~~ll~ss~~~p~ 137 (229)
T PRK06893 79 QYFSP------AVL--E-NLE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK----------ESGKTLLLISANQSPH 137 (229)
T ss_pred HHCCH------HHH--H-HHH--HCCEEEEECHHHHCCCHHHHHHHHHHHHHHH----------HCCCCEEEEECCCCHH
T ss_conf 64069------999--8-765--4797999672342488389999999999999----------7599179985798833
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11111233379998865-43344677877442222556677764101122333321111100012233898689999999
Q gi|254780916|r 287 PQVKSHVFRKDLYYRIS-VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNIL 365 (482)
Q Consensus 287 ~~~~~g~fr~dLy~rL~-~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i 365 (482)
T Consensus 138 ~l~---~~l~DL~SRl~~~~~~~i~~~dd~~-~~-----~iL~~~a~~rgl---~l~~~v~~yl~~r-~~R~~~~l~~~l 204 (229)
T PRK06893 138 ALQ---IKLPDLASRLTWGEIYQLNDLTDEQ-KI-----EVLQRNAYQRGI---ELSDETANFLLKR-LDRDMHTLFDAL 204 (229)
T ss_pred HHC---CHHHHHHHHHHCCEEEEECCCCHHH-HH-----HHHHHHHHHCCC---CCCHHHHHHHHHH-HCCCHHHHHHHH
T ss_conf 221---0026799999688369966777579-99-----999999996499---9998999999998-347899999999
Q ss_pred HHHHH--HCCCCCCCHHHHH
Q ss_conf 99987--4389810688954
Q gi|254780916|r 366 LRAVI--GLKDSHLTEDRFV 383 (482)
Q Consensus 366 ~r~~i--~~~~~~i~~~~~~ 383 (482)
T Consensus 205 ~~Ld~~sl~~kr~iTiplvk 224 (229)
T PRK06893 205 DLLDKASLQAQRKLTIPFVK 224 (229)
T ss_pred HHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999808999999999