HHsearch alignment for GI: 254780916 and conserved domain: PRK07003
>PRK07003 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.41 E-value=1.3e-05 Score=59.30 Aligned_cols=222 Identities=17% Similarity=0.207 Sum_probs=123.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCC-CCCCCCCCCCCCCH
Q ss_conf 2111111112222222222222222344320488732777436799999984267543----321-01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPF-FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~f-i~v~c~~~~~~~~e 208 (482)
T Consensus 10 ~RP~~f~e~vGQ~~v~~~l~nal~~-~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~ 88 (816)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDG-GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (816)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 0898576623849999999999970-986314751178988888999999998678999998978775557877558877
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-32211100123446-------671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
T Consensus 89 d~--iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEep-----------P~hv~Fila 155 (816)
T PRK07003 89 DY--VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PPHVKFILA 155 (816)
T ss_pred CE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEE
T ss_conf 54--78635543576899999986224786674479998415433999999999840379-----------866489995
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
T Consensus 156 TTd~-~k~p-~tilSRc~~f~l~~~~---------~~~i---~~~-l~~i~~~E~---i~~e~~al~lia~~a-~GsmRD 216 (816)
T PRK07003 156 TTDP-QKIP-VTVLSRCLQFNLKQMP---------AGHI---VSH-LERILGEER---IAFEPQALRLLARAA-QGSMRD 216 (816)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCCCC---------HHHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHHH
T ss_conf 5880-1152-8898777652236799---------9999---999-999999829---977999999999976-773788
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
T Consensus 217 alsl~dQaia~~-~g~~~~~~v~~mLG~~ 244 (816)
T PRK07003 217 ALSLTDQAIAYS-ANEVTETAVSGMLGAL 244 (816)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 885999999846-9973799999985888