HHsearch alignment for GI: 254780916 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=96.82 E-value=0.003 Score=42.57 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCC---CCCCC-----CC
Q ss_conf 111112222222222222222344320488732777436799999984--267543321012346---55421-----00
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE--SGKRAFFPFFIVNCG---MIDQD-----KI 207 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~--~s~r~~~~fi~v~c~---~~~~~-----~~ 207 (482)
T Consensus 15 ~~~~liGqe~~~~~L~~a~~~-grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i 93 (363)
T PRK07471 15 ETTALFGHAAAEAALLDAYRS-GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRI 93 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHH
T ss_conf 827316819999999999985-9976458767999818899999999998579997777767870531258777289999
Q ss_pred HHH----HHCCCCCCCC-----------CCCCCC-CCCC--CCCC--CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 243----3112555532-----------211100-1234--4667--147516642001889998888776420011235
Q gi|254780916|r 208 EKF----LFGDVDLQTK-----------NSAQFL-GKFI--EANG--GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDS 267 (482)
Q Consensus 208 e~~----lFG~~~~~~~-----------~~~~~~-g~~~--~a~~--Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~ 267 (482)
T Consensus 94 ~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP------- 166 (363)
T PRK07471 94 AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP------- 166 (363)
T ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC-------
T ss_conf 5269998466762001133321244539999999999724852489669998687873889999999972158-------
Q ss_pred CCCCCCCCEEEEECCCC
Q ss_conf 53212343156521433
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~ 284 (482)
T Consensus 167 ----P~~t~fiLit~~~ 179 (363)
T PRK07471 167 ----PARSLLLLVSHAP 179 (363)
T ss_pred ----CCCEEEEEEECCH
T ss_conf ----9883899863997