HHsearch alignment for GI: 254780916 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.67 E-value=6e-08 Score=75.79 Aligned_cols=208 Identities=12% Similarity=0.033 Sum_probs=120.7
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC--CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222111111112-2222222222222223--44320488732777436799999984267543321012346554210
Q gi|254780916|r 130 PSQENEHCALDSLI-AVSPAMIQVVDLARKA--GDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDK 206 (482)
Q Consensus 130 ~~~~~~~~~~~~Li-G~S~~m~~v~~~i~~~--a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~ 206 (482)
T Consensus 12 ~~~l~~~~tfdnFi~g~n~~~~---~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~--~ 86 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLL---AALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRA--W 86 (235)
T ss_pred CCCCCCCCCHHCCCCCCCHHHH---HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHH--H
T ss_conf 8999997663023448869999---9999998578987699989999888999999999997079857998779866--5
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 0243311255553221110012344667147516642001--88999888877642001123553212343156521433
Q gi|254780916|r 207 IEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 207 ~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
T Consensus 87 ~~~~~l--------------~~l~--~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~-~--------~g~~~ll~ts~~~ 141 (235)
T PRK08084 87 FVPEVL--------------EGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRIL-E--------SGKTRLLITGDRP 141 (235)
T ss_pred HHHHHH--------------HHHH--HCCEEEEECHHHHCCCHHHHHHHHHHHHHHH-H--------HCCCEEEEECCCC
T ss_conf 179999--------------8764--1898998274554699789999999999999-8--------4896699967988
Q ss_pred CCCCCCHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2111111233379998865-433446778--7744222255667776410112233332111110001223389868999
Q gi|254780916|r 285 LLPQVKSHVFRKDLYYRIS-VFLINISTL--RSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQEL 361 (482)
Q Consensus 285 L~~~~~~g~fr~dLy~rL~-~~~i~iPpL--ReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL 361 (482)
T Consensus 142 P~~l~---~~l~DL~SRl~~g~~~~i~~~dde~~~~-i-------L~~~a~~rgl---~l~~~V~~yl~~-~~~R~~~~L 206 (235)
T PRK08084 142 PRQLN---LGLPDLASRLDWGQIYKLQPLSDEEKLQ-A-------LQLRARLRGF---ELPEDVGRFLLK-RLDREMRTL 206 (235)
T ss_pred HHHCC---CCCHHHHHHHHCCCEEEECCCCHHHHHH-H-------HHHHHHHCCC---CCCHHHHHHHHH-HCCCCHHHH
T ss_conf 24302---3128899999569727855999899999-9-------9999997399---999899999998-615889999
Q ss_pred HHHHHHHHH--HCCCCCCCHHHH
Q ss_conf 999999987--438981068895
Q gi|254780916|r 362 KNILLRAVI--GLKDSHLTEDRF 382 (482)
Q Consensus 362 ~n~i~r~~i--~~~~~~i~~~~~ 382 (482)
T Consensus 207 ~~~l~~Ld~~Sl~~kr~iTip~v 229 (235)
T PRK08084 207 FMTLDQLDKASITAQRKLTIPFV 229 (235)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999981999999999