HHsearch alignment for GI: 254780916 and conserved domain: PRK08691
>PRK08691 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.20 E-value=5.4e-05 Score=54.95 Aligned_cols=218 Identities=15% Similarity=0.180 Sum_probs=122.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCCC-CCCCCCCCCC---
Q ss_conf 2111111112222222222222222344320488732777436799999984267543----3210-1234655421---
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPFF-IVNCGMIDQD--- 205 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~fi-~v~c~~~~~~--- 205 (482)
T Consensus 10 ~RP~~F~e~vGQ~~v~~~L~nal~~-~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~~ 88 (704)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE-GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV 88 (704)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 1887475641869999999999981-997523750278987888999999999679999999978777767878558998
Q ss_pred -CCHHHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf -0024331125555-32211100123446-------67147516642001889998888776420011235532123431
Q gi|254780916|r 206 -KIEKFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR 276 (482)
Q Consensus 206 -~~e~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 276 (482)
T Consensus 89 D~~E------iDaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEEP-----------P~~v~ 151 (704)
T PRK08691 89 DLLE------IDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-----------PEHVK 151 (704)
T ss_pred CEEE------EECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEE
T ss_conf 7477------424544588999999985346886785359998315443899999999861479-----------75608
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56521433211111123337999886543344677877442222556677764101122333321111100012233898
Q gi|254780916|r 277 LIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID 356 (482)
Q Consensus 277 iIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPG 356 (482)
T Consensus 152 FilaTTdp-~Klp~-TIlSRC~~f~l~~------------~~~~~i~~~-L~~i~~~E~---i~~e~~al~~ia~~a-~G 212 (704)
T PRK08691 152 FILATTDP-HKVPV-TVLSRCLQFVLRN------------MTAQQVADH-LAHVLDSEK---IAYEPPALQLLGRAA-AG 212 (704)
T ss_pred EEEECCCH-HHCCH-HHHHHHHHHCCCC------------CCHHHHHHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CC
T ss_conf 99854884-64758-9998887710268------------999999999-999999839---856899999999975-78
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 689999999999874389810688954542124
Q gi|254780916|r 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 357 NvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
T Consensus 213 s~RDalslldQaia~~-~g~~~~~~v~~mLG~~ 244 (704)
T PRK08691 213 SMRDALSLLDQAIALG-SGKVAENDVRQMIGAV 244 (704)
T ss_pred CHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 5777988999999964-8962699999985888