HHsearch alignment for GI: 254780916 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.28 E-value=2.8e-05 Score=56.97 Aligned_cols=222 Identities=14% Similarity=0.170 Sum_probs=123.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC----CCCCCC-CCCCCCCCCCCCH
Q ss_conf 21111111122222222222222223443204887327774367999999842675----433210-1234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR----AFFPFF-IVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r----~~~~fi-~v~c~~~~~~~~e 208 (482)
T Consensus 10 ~RP~~f~e~vGQ~~v~~~L~nal~~-~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~ 88 (717)
T PRK08853 10 WRPTQFKEVVGQSHVLTALENALAH-NRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFV 88 (717)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 1798565513859999999999970-997405761088988898999999998678999999978887026767447877
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-32211100123446-------671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
T Consensus 89 d~~--EiDaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEP-----------P~hv~Fila 155 (717)
T PRK08853 89 DLL--EIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEYVKFLLA 155 (717)
T ss_pred CEE--EECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEE
T ss_conf 524--5405656788999999985554887785479998305443899999998760378-----------756489984
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
T Consensus 156 TT~~-~kip-~TilSRc~~f~l~~~~---------~~~i---~~~-l~~i~~~E~---i~~~~~al~~ia~~a-~Gs~Rd 216 (717)
T PRK08853 156 TTDP-QKLP-VTILSRCLQFHLKPIS---------VDQI---HQQ-LDFVLDKEQ---VSAEARALGLIAHAA-DGSMRD 216 (717)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCCCC---------HHHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHHH
T ss_conf 3873-4373-8898765442326899---------9999---999-999999759---876999999999976-883778
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
T Consensus 217 alsl~dqaia~~-~g~~~~~~v~~mlg~~ 244 (717)
T PRK08853 217 ALSLTDQAIALG-NGQVTTDIVSHMLGTL 244 (717)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 888999999965-8971699999985888