HHsearch alignment for GI: 254780916 and conserved domain: PRK09111

>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.21  E-value=2.4e-05  Score=57.36  Aligned_cols=215  Identities=18%  Similarity=0.212  Sum_probs=126.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC-----CCCCCCCC-----CCCCCCC
Q ss_conf             2111111112222222222222222344320488732777436799999984267-----54332101-----2346554
Q gi|254780916|r  134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK-----RAFFPFFI-----VNCGMID  203 (482)
Q Consensus       134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~-----r~~~~fi~-----v~c~~~~  203 (482)
T Consensus        17 ~rp~~f~~~~gq~~~~~~l~~~~~-~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~   95 (600)
T PRK09111         17 YRPQTFDDLIGQEAMVRTLRNAFE-TGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIM   95 (600)
T ss_pred             CCCCCHHHHCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             179877663385999999999997-2984204764578987899999999999669887666899889899886589886


Q ss_pred             CC----CCHHHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             21----0024331125555-3221110012344-------6671475166420018899988887764200112355321
Q gi|254780916|r  204 QD----KIEKFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAI  271 (482)
Q Consensus       204 ~~----~~e~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~  271 (482)
T Consensus        96 ~~~~~d~~e------~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktleep-----------  158 (600)
T PRK09111         96 EGRHVDVIE------MDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-----------  158 (600)
T ss_pred             CCCCCCEEE------EECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------
T ss_conf             689987588------515545788899999986053887775469996001105799999999876259-----------


Q ss_pred             CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             23431565214332111111233379998865433446778774----42222556677764101122333321111100
Q gi|254780916|r  272 RLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSR----SEDIPWLVHFFLQSFCTKNAIKQISISDKALS  347 (482)
Q Consensus       272 ~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR----~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~  347 (482)
T Consensus       159 p~~~~fi~att~~~k------------------~p~ti~src~~f~~~~~~~~~~~~~-l~~i~~~e~---~~~~~~al~  216 (600)
T PRK09111        159 PPHVKFIFATTEIRK------------------VPVTVLSRCQRFDLRRIEAEVLAAH-LARIAEKEG---VEVEPDALA  216 (600)
T ss_pred             CCCEEEEEECCCHHH------------------CCHHHHHHHHEECCCCCCHHHHHHH-HHHHHHHCC---CCCCHHHHH
T ss_conf             865499996285343------------------7589985441201057999999999-999998607---686677999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf             0122338986899999999998743898106889545421244
Q gi|254780916|r  348 LLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG  390 (482)
Q Consensus       348 ~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~  390 (482)
T Consensus       217 ~ia~~a-~GS~RDaLSlLDQai~~-~~~~i~~~~v~~mLGl~d  257 (600)
T PRK09111        217 LIARAA-EGSVRDGLSLLDQAIAH-GAGEVTAEQVRDMLGLAD  257 (600)
T ss_pred             HHHHHC-CCCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCC
T ss_conf             999974-89842189999999972-798756999999868876