HHsearch alignment for GI: 254780916 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.21 E-value=2.4e-05 Score=57.36 Aligned_cols=215 Identities=18% Similarity=0.212 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC-----CCCCCCCC-----CCCCCCC
Q ss_conf 2111111112222222222222222344320488732777436799999984267-----54332101-----2346554
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK-----RAFFPFFI-----VNCGMID 203 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~-----r~~~~fi~-----v~c~~~~ 203 (482)
T Consensus 17 ~rp~~f~~~~gq~~~~~~l~~~~~-~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~ 95 (600)
T PRK09111 17 YRPQTFDDLIGQEAMVRTLRNAFE-TGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIM 95 (600)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 179877663385999999999997-2984204764578987899999999999669887666899889899886589886
Q ss_pred CC----CCHHHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 21----0024331125555-3221110012344-------6671475166420018899988887764200112355321
Q gi|254780916|r 204 QD----KIEKFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAI 271 (482)
Q Consensus 204 ~~----~~e~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 271 (482)
T Consensus 96 ~~~~~d~~e------~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktleep----------- 158 (600)
T PRK09111 96 EGRHVDVIE------MDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP----------- 158 (600)
T ss_pred CCCCCCEEE------EECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------
T ss_conf 689987588------515545788899999986053887775469996001105799999999876259-----------
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 23431565214332111111233379998865433446778774----42222556677764101122333321111100
Q gi|254780916|r 272 RLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSR----SEDIPWLVHFFLQSFCTKNAIKQISISDKALS 347 (482)
Q Consensus 272 ~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR----~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~ 347 (482)
T Consensus 159 p~~~~fi~att~~~k------------------~p~ti~src~~f~~~~~~~~~~~~~-l~~i~~~e~---~~~~~~al~ 216 (600)
T PRK09111 159 PPHVKFIFATTEIRK------------------VPVTVLSRCQRFDLRRIEAEVLAAH-LARIAEKEG---VEVEPDALA 216 (600)
T ss_pred CCCEEEEEECCCHHH------------------CCHHHHHHHHEECCCCCCHHHHHHH-HHHHHHHCC---CCCCHHHHH
T ss_conf 865499996285343------------------7589985441201057999999999-999998607---686677999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 0122338986899999999998743898106889545421244
Q gi|254780916|r 348 LLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 348 ~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
T Consensus 217 ~ia~~a-~GS~RDaLSlLDQai~~-~~~~i~~~~v~~mLGl~d 257 (600)
T PRK09111 217 LIARAA-EGSVRDGLSLLDQAIAH-GAGEVTAEQVRDMLGLAD 257 (600)
T ss_pred HHHHHC-CCCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCC
T ss_conf 999974-89842189999999972-798756999999868876