HHsearch alignment for GI: 254780916 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.05 E-value=0.0019 Score=44.03 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH----HCCCCCCCCCC--CCC--C---C----C
Q ss_conf 111111222222222222222234432048873277743679999998----42675433210--123--4---6----5
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIH----ESGKRAFFPFF--IVN--C---G----M 201 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH----~~s~r~~~~fi--~v~--c---~----~ 201 (482)
T Consensus 20 r~~~~liGq~~~~~~L~~a~~-~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g 98 (352)
T PRK09112 20 SENNRLFGHEEARAFLAQAYR-EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQG 98 (352)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 446462786999999999998-4996524653589980899999999999866998666865567888787789999748
Q ss_pred CCCCCCH-HHHHCCCCC-C-CC---CCCCCC-CCCC--CCCCC--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5421002-433112555-5-32---211100-1234--46671--47516642001889998888776420011235532
Q gi|254780916|r 202 IDQDKIE-KFLFGDVDL-Q-TK---NSAQFL-GKFI--EANGG--TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGA 270 (482)
Q Consensus 202 ~~~~~~e-~~lFG~~~~-~-~~---~~~~~~-g~~~--~a~~G--tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~ 270 (482)
T Consensus 99 ~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEP---------- 168 (352)
T PRK09112 99 AHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP---------- 168 (352)
T ss_pred CCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC----------
T ss_conf 9999565534322021454335777999999998454886688069998187874699999999985348----------
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 12343156521433
Q gi|254780916|r 271 IRLDVRLIFLTEKN 284 (482)
Q Consensus 271 ~~~~~RiIa~t~~~ 284 (482)
T Consensus 169 -p~~~~fiLit~~~ 181 (352)
T PRK09112 169 -PARALFILISHSS 181 (352)
T ss_pred -CCCEEEEEEECCH
T ss_conf -9874899886997