HHsearch alignment for GI: 254780916 and conserved domain: PRK09112

>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.05  E-value=0.0019  Score=44.03  Aligned_cols=136  Identities=13%  Similarity=0.156  Sum_probs=71.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH----HCCCCCCCCCC--CCC--C---C----C
Q ss_conf             111111222222222222222234432048873277743679999998----42675433210--123--4---6----5
Q gi|254780916|r  137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIH----ESGKRAFFPFF--IVN--C---G----M  201 (482)
Q Consensus       137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH----~~s~r~~~~fi--~v~--c---~----~  201 (482)
T Consensus        20 r~~~~liGq~~~~~~L~~a~~-~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g   98 (352)
T PRK09112         20 SENNRLFGHEEARAFLAQAYR-EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQG   98 (352)
T ss_pred             CCHHHHCCHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             446462786999999999998-4996524653589980899999999999866998666865567888787789999748


Q ss_pred             CCCCCCH-HHHHCCCCC-C-CC---CCCCCC-CCCC--CCCCC--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             5421002-433112555-5-32---211100-1234--46671--47516642001889998888776420011235532
Q gi|254780916|r  202 IDQDKIE-KFLFGDVDL-Q-TK---NSAQFL-GKFI--EANGG--TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGA  270 (482)
Q Consensus       202 ~~~~~~e-~~lFG~~~~-~-~~---~~~~~~-g~~~--~a~~G--tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~  270 (482)
T Consensus        99 ~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEP----------  168 (352)
T PRK09112         99 AHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP----------  168 (352)
T ss_pred             CCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC----------
T ss_conf             9999565534322021454335777999999998454886688069998187874699999999985348----------


Q ss_pred             CCCCCEEEEECCCC
Q ss_conf             12343156521433
Q gi|254780916|r  271 IRLDVRLIFLTEKN  284 (482)
Q Consensus       271 ~~~~~RiIa~t~~~  284 (482)
T Consensus       169 -p~~~~fiLit~~~  181 (352)
T PRK09112        169 -PARALFILISHSS  181 (352)
T ss_pred             -CCCEEEEEEECCH
T ss_conf             -9874899886997