HHsearch alignment for GI: 254780916 and conserved domain: PRK10046
>PRK10046 dpiA two-component response regulator DpiA; Provisional.
Probab=99.91 E-value=7.4e-24 Score=188.26 Aligned_cols=121 Identities=9% Similarity=0.198 Sum_probs=111.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHH-CCCE-EEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 35288389986998999999999998-8988-999893--7999986089989999785469888999999998578983
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVES-YGYD-VFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVP 82 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~-~G~~-v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ip 82 (482)
T Consensus 1 M~~~i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~~~~~~ 80 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGD 80 (225)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99988699995989999999999972899549999899999999997359999998289899979999999996487998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999926899999998885057432222222222222222222222
Q gi|254780916|r 83 IIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 83 vIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
T Consensus 81 VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~~~ 125 (225)
T PRK10046 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf 899968999999999997499831028999999999999999999