HHsearch alignment for GI: 254780916 and conserved domain: PRK10701
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional.
Probab=99.87 E-value=2.2e-22 Score=177.77 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=108.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~~-~~PiI~lt 79 (240)
T PRK10701 1 MNTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPKW-SGPIVLLT 79 (240)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCC-CCCEEEEE
T ss_conf 99899997999999999999988799999989999999998617999999928997678878763110258-98789994
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 689999999888505743222222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~ 129 (482)
T Consensus 80 a~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr~~~ 121 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 (240)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 057578899999768877641799879999999999965325