HHsearch alignment for GI: 254780916 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.80  E-value=2.1e-08  Score=79.09  Aligned_cols=201  Identities=19%  Similarity=0.219  Sum_probs=131.8

Q ss_pred             CCCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC--CCCCCE
Q ss_conf             432048-873277743679999998426754332101234655421002433112555532211100-1234--466714
Q gi|254780916|r  161 DCAIPI-MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFL-GKFI--EANGGT  236 (482)
Q Consensus       161 ~~~~~v-li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~-g~~~--~a~~Gt  236 (482)
T Consensus       346 ~~kg~IlclvGpPGvGKTSl~~sIA~al~---r~f~rislGGv~D---eaeirGHrrTYvgampGrii~~l~~a~~~nPv  419 (784)
T PRK10787        346 KIKGPILCLVGPPGVGKTSLGQSIAKATG---RKYVRMALGGVRD---EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPL  419 (784)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             67787799646998772469999999858---9869980688788---88825643343443683899999974898856


Q ss_pred             EEECCCCHHHHHHH----HHHHHHHH---HHHCCCCCCCCCCC---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             75166420018899----98888776---42001123553212---3431565214332111111233379998865433
Q gi|254780916|r  237 IVLEEPDALPLAVQ----GRIYNFIE---TGKIEFFDSRGAIR---LDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFL  306 (482)
Q Consensus       237 l~l~ei~~L~~~~Q----~~Ll~~l~---~~~~~~~g~~~~~~---~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~  306 (482)
T Consensus       420 ~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~--Dhyl~~~~DlS~v~Fi~TaN-~~~--i-----------------  477 (784)
T PRK10787        420 FLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFS--DHYLEVDYDLSDVMFVATSN-SMN--I-----------------  477 (784)
T ss_pred             EEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCC--CCEEECCCCHHHEEEEEECC-CCC--C-----------------
T ss_conf             6500355522455899889999845976556400--03220464522258997327-677--8-----------------


Q ss_pred             HHHHHHHHHHHHHH----------HH-HHHHHHHHCCCCCCC--CCCCCCCCCCCC-CCCCCCCCHHHHHHHHHH----H
Q ss_conf             44677877442222----------55-667776410112233--332111110001-223389868999999999----9
Q gi|254780916|r  307 INISTLRSRSEDIP----------WL-VHFFLQSFCTKNAIK--QISISDKALSLL-TKYPWIDNVQELKNILLR----A  368 (482)
Q Consensus       307 i~iPpLReR~eDI~----------~L-~~~fl~~~~~~~~~~--~~~ls~~a~~~L-~~y~WPGNvREL~n~i~r----~  368 (482)
T Consensus       478 --p~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~  555 (784)
T PRK10787        478 --PAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA  555 (784)
T ss_pred             --CHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             --767763121554116767889999997453999998289965674399999998753365444251688999999999


Q ss_pred             HH--H-CCC---CCCCHHHHHHHHCCCCC
Q ss_conf             87--4-389---81068895454212445
Q gi|254780916|r  369 VI--G-LKD---SHLTEDRFVLLLSREGK  391 (482)
Q Consensus       369 ~i--~-~~~---~~i~~~~~~~~l~~~~~  391 (482)
T Consensus       556 ~~~~~~~~~~~~~~i~~~~l~~~lg~~~~  584 (784)
T PRK10787        556 VKQLLLDKSLKHIEINGDNLHDYLGVQRF  584 (784)
T ss_pred             HHHHHCCCCCCCEEECHHHHHHHHCCCCC
T ss_conf             99997078878558889999998299878