HHsearch alignment for GI: 254780916 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.80 E-value=2.1e-08 Score=79.09 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=131.8
Q ss_pred CCCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC--CCCCCE
Q ss_conf 432048-873277743679999998426754332101234655421002433112555532211100-1234--466714
Q gi|254780916|r 161 DCAIPI-MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFL-GKFI--EANGGT 236 (482)
Q Consensus 161 ~~~~~v-li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~-g~~~--~a~~Gt 236 (482)
T Consensus 346 ~~kg~IlclvGpPGvGKTSl~~sIA~al~---r~f~rislGGv~D---eaeirGHrrTYvgampGrii~~l~~a~~~nPv 419 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATG---RKYVRMALGGVRD---EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPL 419 (784)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 67787799646998772469999999858---9869980688788---88825643343443683899999974898856
Q ss_pred EEECCCCHHHHHHH----HHHHHHHH---HHHCCCCCCCCCCC---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 75166420018899----98888776---42001123553212---3431565214332111111233379998865433
Q gi|254780916|r 237 IVLEEPDALPLAVQ----GRIYNFIE---TGKIEFFDSRGAIR---LDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFL 306 (482)
Q Consensus 237 l~l~ei~~L~~~~Q----~~Ll~~l~---~~~~~~~g~~~~~~---~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~ 306 (482)
T Consensus 420 ~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~--Dhyl~~~~DlS~v~Fi~TaN-~~~--i----------------- 477 (784)
T PRK10787 420 FLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFS--DHYLEVDYDLSDVMFVATSN-SMN--I----------------- 477 (784)
T ss_pred EEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCC--CCEEECCCCHHHEEEEEECC-CCC--C-----------------
T ss_conf 6500355522455899889999845976556400--03220464522258997327-677--8-----------------
Q ss_pred HHHHHHHHHHHHHH----------HH-HHHHHHHHCCCCCCC--CCCCCCCCCCCC-CCCCCCCCHHHHHHHHHH----H
Q ss_conf 44677877442222----------55-667776410112233--332111110001-223389868999999999----9
Q gi|254780916|r 307 INISTLRSRSEDIP----------WL-VHFFLQSFCTKNAIK--QISISDKALSLL-TKYPWIDNVQELKNILLR----A 368 (482)
Q Consensus 307 i~iPpLReR~eDI~----------~L-~~~fl~~~~~~~~~~--~~~ls~~a~~~L-~~y~WPGNvREL~n~i~r----~ 368 (482)
T Consensus 478 --p~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~ 555 (784)
T PRK10787 478 --PAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA 555 (784)
T ss_pred --CHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf --767763121554116767889999997453999998289965674399999998753365444251688999999999
Q ss_pred HH--H-CCC---CCCCHHHHHHHHCCCCC
Q ss_conf 87--4-389---81068895454212445
Q gi|254780916|r 369 VI--G-LKD---SHLTEDRFVLLLSREGK 391 (482)
Q Consensus 369 ~i--~-~~~---~~i~~~~~~~~l~~~~~ 391 (482)
T Consensus 556 ~~~~~~~~~~~~~~i~~~~l~~~lg~~~~ 584 (784)
T PRK10787 556 VKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred HHHHHCCCCCCCEEECHHHHHHHHCCCCC
T ss_conf 99997078878558889999998299878