HHsearch alignment for GI: 254780916 and conserved domain: PRK11107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=98.39 E-value=9e-06 Score=60.42 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=87.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-HCCC-CCEEEE
Q ss_conf 28838998699899999999999889889998937999986089989999785469888999999998-5789-839999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSLINCEDDKENILKNIVD-KIPI-VPIIVQ 86 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~al~~l~~~~~dlillD~~mP~~dGlell~~i~~-~~p~-ipvIii 86 (482)
T Consensus 535 ~g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~--~~~l~~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il~ 612 (920)
T PRK11107 535 AGKRLLYVEPNSLAAQATLDLLSETPLEVTYSPT--LSQLPEAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLILA 612 (920)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCC--HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 5876999769778999999999974964575178--87751368887996166666540667899986300357846997
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268999999988850574322222222222222222
Q gi|254780916|r 87 TTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIIC 122 (482)
Q Consensus 87 T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~ 122 (482)
T Consensus 613 ~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~~ 648 (920)
T PRK11107 613 LPCHEQVNAEQLKQPGADACLSKPLSETRLLPALLT 648 (920)
T ss_pred ECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHC
T ss_conf 156434557887642530211277768899998722