HHsearch alignment for GI: 254780916 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=100.00 E-value=0 Score=637.04 Aligned_cols=319 Identities=24% Similarity=0.402 Sum_probs=281.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CC
Q ss_conf 11112222222222222222344320488732777436799999984267543321012346554210024331125-55
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-DL 217 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-~~ 217 (482)
T Consensus 5 ~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~ 84 (325)
T PRK11608 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 (325)
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 89985899999999999999968899989889898379999999996588679997788779899778899872775567
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 53221110012344667147516642001889998888776420011235532123431565214332111111233379
Q gi|254780916|r 218 QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKD 297 (482)
Q Consensus 218 ~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~d 297 (482)
T Consensus 85 ~~~~~~~~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~d 164 (325)
T PRK11608 85 FTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164 (325)
T ss_pred CCCCCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHH
T ss_conf 67753246873435689869973745479999999999986490885799876656468871332208999983956799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99886543344677877442222556677764101122333-32111110001223389868999999999987438981
Q gi|254780916|r 298 LYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSH 376 (482)
Q Consensus 298 Ly~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~-~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~ 376 (482)
T Consensus 165 Ly~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ierav~~~~~~~ 244 (325)
T PRK11608 165 LLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 (325)
T ss_pred HHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 98565301115868454710199999999999999829998888899999999619999659999999999998568876
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 06889545421244543223432222223344432100000000112344454325899999999999999982872789
Q gi|254780916|r 377 LTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSE 456 (482)
Q Consensus 377 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~ 456 (482)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~---------~~----------~~~~~~~~-~~~l~~~~~~~Ek~~I~~aL~~~~gn~~~ 304 (325)
T PRK11608 245 YPLDDIIIDPFKRRPPEEAIA---------VS----------EATSLPTL-PLDLREFQHQQEKELLQRSLQQAKFNQKR 304 (325)
T ss_pred CCHHHHCCCHHHCCCCCCCCC---------CC----------CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 555542137121056556778---------77----------75456677-86899999999999999999993998999
Q ss_pred HHHHHCCCHHHHHHHHHHHCC
Q ss_conf 997848998899999998188
Q gi|254780916|r 457 VARRLGIGRSTLYRKIREYNI 477 (482)
Q Consensus 457 aA~~LGIsR~tL~rKlk~~gi 477 (482)
T Consensus 305 aA~~LGIsR~tL~~klkky~l 325 (325)
T PRK11608 305 AAELLGLTYHQFRALLKKHQI 325 (325)
T ss_pred HHHHHCCCHHHHHHHHHHCCC
T ss_conf 999988899999999997589