HHsearch alignment for GI: 254780916 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=97.68 E-value=0.00024 Score=50.41 Aligned_cols=223 Identities=14% Similarity=0.151 Sum_probs=125.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-----CCCCCC-----CCCCCCCC
Q ss_conf 21111111122222222222222223443204887327774367999999842675-----433210-----12346554
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-----AFFPFF-----IVNCGMID 203 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-----~~~~fi-----~v~c~~~~ 203 (482)
T Consensus 10 ~RP~~F~~~vGQ~~v~~~l~na~~~-~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~ 88 (721)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEID 88 (721)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 0798665532859999999999971-997544750279988898999999999768998667898788787765468775
Q ss_pred CCCCHHHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 210024331125555-3221110012344-------66714751664200188999888877642001123553212343
Q gi|254780916|r 204 QDKIEKFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDV 275 (482)
Q Consensus 204 ~~~~e~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 275 (482)
T Consensus 89 ~g~~~d~-~-EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEeP-----------P~hv 155 (721)
T PRK12323 89 AGRFVDY-I-EMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PPHV 155 (721)
T ss_pred CCCCCCE-E-EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC-----------CCCE
T ss_conf 6898764-7-7436767888999999985455887664469998540005899999999840179-----------7553
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 15652143321111112333799988654334467787744222255667776410112233332111110001223389
Q gi|254780916|r 276 RLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355 (482)
Q Consensus 276 RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WP 355 (482)
T Consensus 156 ~FilaTT~~-~Kip-~TilSRc~~f~~~~------------~~~~~i~~~-l~~i~~~E~---i~~~~~al~~ia~~-a~ 216 (721)
T PRK12323 156 KFILATTDP-QKIP-VTVLSRCLQFNLKQ------------MPPGHIVSH-LDAILGQEG---IGHEGNALRLLAQA-AH 216 (721)
T ss_pred EEEEECCCH-HHCC-HHHHHHHHHCCCCC------------CCHHHHHHH-HHHHHHHCC---CCCCHHHHHHHHHH-CC
T ss_conf 899943863-4485-88987765423478------------999999999-999999839---97799999999997-58
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 86899999999998743898106889545421244
Q gi|254780916|r 356 DNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 356 GNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
T Consensus 217 Gs~RDalslldQaia~~~-g~~~~~~v~~mlg~~d 250 (721)
T PRK12323 217 GSMRDALSLTDQAIAYSA-GNVSEEAVRGMLGAID 250 (721)
T ss_pred CCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCC
T ss_conf 964768889999998658-9626999999868887