HHsearch alignment for GI: 254780916 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=98.98 E-value=6.3e-09 Score=82.71 Aligned_cols=209 Identities=19% Similarity=0.204 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCC----CCHHH
Q ss_conf 11111122222222222222223443204887327774367999999842--6754332101234655421----00243
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES--GKRAFFPFFIVNCGMIDQD----KIEKF 210 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~--s~r~~~~fi~v~c~~~~~~----~~e~~ 210 (482)
T Consensus 12 ~~~~dvvGq~~i~~~L~~~~~~--~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~ 89 (337)
T PRK12402 12 SLFEDILGQESVVDHLSALAAS--GNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDP 89 (337)
T ss_pred CCHHHHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCC
T ss_conf 9799803979999999999977--99876988892984899999999999679975678333116531135640010166
Q ss_pred ----HHCCCCCCCCCCC-CC-CCCC--------CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf ----3112555532211-10-0123--------44667147516642001889998888776420011235532123431
Q gi|254780916|r 211 ----LFGDVDLQTKNSA-QF-LGKF--------IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR 276 (482)
Q Consensus 211 ----lFG~~~~~~~~~~-~~-~g~~--------~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 276 (482)
T Consensus 90 ~~~~~~~~~-~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~-----------~~~~~ 157 (337)
T PRK12402 90 RFAHFYDDP-KRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERY-----------SETCR 157 (337)
T ss_pred CHHHHHCCH-HHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCEE
T ss_conf 423442015-332773789999999998614887788049997071317999999999887408-----------87669
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56521433211111123337999886543344677877442222------556677764101122333321111100012
Q gi|254780916|r 277 LIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIP------WLVHFFLQSFCTKNAIKQISISDKALSLLT 350 (482)
Q Consensus 277 iIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~------~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~ 350 (482)
T Consensus 158 fIl~t~~~-~~i--------------------i~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~E~i---~~~~~~l~~ia 213 (337)
T PRK12402 158 FIFSTTQP-SKL--------------------IPPIRSRCLPLFFRPVPDDEIRSVLESIAAAEGV---EISDDGLDLIA 213 (337)
T ss_pred EEEECCCC-CCC--------------------CHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCC---CCCHHHHHHHH
T ss_conf 98723864-447--------------------5247762445435898999999999999998499---98999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 23389868999999999987438981068895454
Q gi|254780916|r 351 KYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLL 385 (482)
Q Consensus 351 ~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~ 385 (482)
T Consensus 214 ~~s-~GdlR~ain~Lq~~~~-~~~~~~~~~~~~~~ 246 (337)
T PRK12402 214 YYA-EGDLRKAILTLQLAAE-AEGEVTTEAALEEL 246 (337)
T ss_pred HHC-CCCHHHHHHHHHHHHH-HCCCCCCHHHHHHH
T ss_conf 986-9989999999999987-27997718899998