HHsearch alignment for GI: 254780916 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.25 E-value=1.8e-11 Score=100.69 Aligned_cols=201 Identities=19% Similarity=0.221 Sum_probs=131.5
Q ss_pred CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 211111111222222222---22222223443204887327774367999999842675433210123465542100243
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQ---VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKF 210 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~---v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~ 210 (482)
T Consensus 22 mRP~~Lde~vGQ~hllg~g~~Lrr~i~--~~~~~S~Il~GPPGtGKTTLA~iIA~~t~---~~F~~lsAv~sgvkdlr~i 96 (726)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTR---AHFSSLNAVLAGVKDLRAE 96 (726)
T ss_pred HCCCCHHHHCCCHHHCCCCCHHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCHHHHHHH
T ss_conf 299987773595754289828999997--69998278889799999999999988748---8679985620377999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 31125555322111001234466-71475166420018899988887764200112355321234315652143321111
Q gi|254780916|r 211 LFGDVDLQTKNSAQFLGKFIEAN-GGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQV 289 (482)
Q Consensus 211 lFG~~~~~~~~~~~~~g~~~~a~-~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~ 289 (482)
T Consensus 97 -i------~~A-~~~---~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~G~i-------------~LIGATTENP~F~v 152 (726)
T PRK13341 97 -V------DAA-KER---LERHGKRTILFIDEVHRFNKAQQDALLPWVENGTV-------------TLIGATTENPYFEV 152 (726)
T ss_pred -H------HHH-HHH---HHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCEE-------------EEEEECCCCCCEEE
T ss_conf -9------999-999---87459965999862542588789987888606838-------------99970478974364
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11233379998865433446778774422225566777641011223333211111000122338986899999999998
Q gi|254780916|r 290 KSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 290 ~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~ 369 (482)
T Consensus 153 n~A-----LlSR~~vf--~L~~L~~--~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s-~GDaR~aLN~LElav 222 (726)
T PRK13341 153 NKA-----LVSRSRLF--RLKSLED--EDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVA-NGDARSLLNALELAV 222 (726)
T ss_pred CHH-----HHHHCEEE--EECCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 298-----88323466--7438999--9999999999876743256678775989999999975-973999999999999
Q ss_pred HHCC
Q ss_conf 7438
Q gi|254780916|r 370 IGLK 373 (482)
Q Consensus 370 i~~~ 373 (482)
T Consensus 223 ~~~~ 226 (726)
T PRK13341 223 ESTP 226 (726)
T ss_pred HHCC
T ss_conf 7074