HHsearch alignment for GI: 254780916 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.34 E-value=1.2e-11 Score=101.85 Aligned_cols=210 Identities=19% Similarity=0.217 Sum_probs=137.8
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1111111222222222---2222222344320488732777436799999984267543321012346554210024331
Q gi|254780916|r 136 HCALDSLIAVSPAMIQ---VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~---v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
T Consensus 9 P~~lde~vGQ~hllg~~~~L~~~i~~--~~~~s~Il~GPPG~GKTTlA~iiA~~~---~~~f~~lnA~~~gv~dir-~ii 82 (417)
T PRK13342 9 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGAT---DAEFEALSAVTSGVKDLR-EVI 82 (417)
T ss_pred CCCHHHHCCCHHHHCCCHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCHHHHH-HHH
T ss_conf 99888857987760897199999976--999759988969998999999999986---898899614103889999-999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 12555532211100123446671-47516642001889998888776420011235532123431565214332111111
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEANGG-TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKS 291 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a~~G-tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~ 291 (482)
T Consensus 83 ~~------a~~~------~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~-------------iiLIgATTENP~f~in~ 137 (417)
T PRK13342 83 EE------AKQS------RLGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTENPSFEVNP 137 (417)
T ss_pred HH------HHHH------HCCCCEEEEEECHHHCCHHHHHHHHHHHHCCC-------------EEEEEECCCCCHHHCCH
T ss_conf 99------8863------14896599997820058899999987511265-------------69997415792253489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23337999886543344677877442222556677764101122333321111100012233898689999999999874
Q gi|254780916|r 292 HVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIG 371 (482)
Q Consensus 292 g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~ 371 (482)
T Consensus 138 -----aLlSRc~vf--~l~~L~--~~di~~iL~ral~~-e~~~~~-~i~i~~~al~~i~~~s-~GDaR~aLN~LE~a~~~ 205 (417)
T PRK13342 138 -----ALLSRAQVF--ELKPLS--EEDLEQLLKRALED-ERGLGR-KLELDDEALDALARLA-DGDARRALNLLELAAAA 205 (417)
T ss_pred -----HHHHHHHHE--ECCCCC--HHHHHHHHHHHHHH-HHCCCC-CCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf -----898565700--205899--99999999999987-743378-8776999999999814-98599999999999852
Q ss_pred CC-CCCCCHHHHHHHHCC
Q ss_conf 38-981068895454212
Q gi|254780916|r 372 LK-DSHLTEDRFVLLLSR 388 (482)
Q Consensus 372 ~~-~~~i~~~~~~~~l~~ 388 (482)
T Consensus 206 ~~~~~~i~~~~~~~~~~~ 223 (417)
T PRK13342 206 AAGGEVITLELLEEALQR 223 (417)
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 589973489999999844