HHsearch alignment for GI: 254780916 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.34  E-value=1.2e-11  Score=101.85  Aligned_cols=210  Identities=19%  Similarity=0.217  Sum_probs=137.8

Q ss_pred             CCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             1111111222222222---2222222344320488732777436799999984267543321012346554210024331
Q gi|254780916|r  136 HCALDSLIAVSPAMIQ---VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF  212 (482)
Q Consensus       136 ~~~~~~LiG~S~~m~~---v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF  212 (482)
T Consensus         9 P~~lde~vGQ~hllg~~~~L~~~i~~--~~~~s~Il~GPPG~GKTTlA~iiA~~~---~~~f~~lnA~~~gv~dir-~ii   82 (417)
T PRK13342          9 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGAT---DAEFEALSAVTSGVKDLR-EVI   82 (417)
T ss_pred             CCCHHHHCCCHHHHCCCHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCHHHHH-HHH
T ss_conf             99888857987760897199999976--999759988969998999999999986---898899614103889999-999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf             12555532211100123446671-47516642001889998888776420011235532123431565214332111111
Q gi|254780916|r  213 GDVDLQTKNSAQFLGKFIEANGG-TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKS  291 (482)
Q Consensus       213 G~~~~~~~~~~~~~g~~~~a~~G-tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~  291 (482)
T Consensus        83 ~~------a~~~------~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~-------------iiLIgATTENP~f~in~  137 (417)
T PRK13342         83 EE------AKQS------RLGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTENPSFEVNP  137 (417)
T ss_pred             HH------HHHH------HCCCCEEEEEECHHHCCHHHHHHHHHHHHCCC-------------EEEEEECCCCCHHHCCH
T ss_conf             99------8863------14896599997820058899999987511265-------------69997415792253489


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23337999886543344677877442222556677764101122333321111100012233898689999999999874
Q gi|254780916|r  292 HVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIG  371 (482)
Q Consensus       292 g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~  371 (482)
T Consensus       138 -----aLlSRc~vf--~l~~L~--~~di~~iL~ral~~-e~~~~~-~i~i~~~al~~i~~~s-~GDaR~aLN~LE~a~~~  205 (417)
T PRK13342        138 -----ALLSRAQVF--ELKPLS--EEDLEQLLKRALED-ERGLGR-KLELDDEALDALARLA-DGDARRALNLLELAAAA  205 (417)
T ss_pred             -----HHHHHHHHE--ECCCCC--HHHHHHHHHHHHHH-HHCCCC-CCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf             -----898565700--205899--99999999999987-743378-8776999999999814-98599999999999852


Q ss_pred             CC-CCCCCHHHHHHHHCC
Q ss_conf             38-981068895454212
Q gi|254780916|r  372 LK-DSHLTEDRFVLLLSR  388 (482)
Q Consensus       372 ~~-~~~i~~~~~~~~l~~  388 (482)
T Consensus       206 ~~~~~~i~~~~~~~~~~~  223 (417)
T PRK13342        206 AAGGEVITLELLEEALQR  223 (417)
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             589973489999999844