HHsearch alignment for GI: 254780916 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=99.86 E-value=6.1e-21 Score=167.61 Aligned_cols=118 Identities=14% Similarity=0.235 Sum_probs=107.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCC-CCCEEEEECCCC-CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 28838998699899999999999889889998937--99998608-998999978546-988899999999857898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKI-QVNVIFLSLINC-EDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~-~~dlillD~~mP-~~dGlell~~i~~~~p~ipvI 84 (482)
T Consensus 412 ~~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~ii 491 (538)
T PRK13557 412 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 491 (538)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 87258996798999999999999769999998999999999960999889988777999988999999998538998399
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 992689999999888505743222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
T Consensus 492 ~~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 533 (538)
T PRK13557 492 LTTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLDG 533 (538)
T ss_pred EEECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCC
T ss_conf 997998778899775289988881989999999999998678