HHsearch alignment for GI: 254780916 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.48  E-value=1.6e-14  Score=122.23  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=94.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             3899869989999999999988988999893--79999860899899997854698889999999985789839999268
Q gi|254780916|r   12 RVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQ   89 (482)
Q Consensus        12 rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~   89 (482)
T Consensus        19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~~   98 (674)
T PRK13558         19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPTA   98 (674)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             99994688877752345666774212763238889865315898769965657888679999998613899988999567


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999988850574322222222222222222222
Q gi|254780916|r   90 DNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR  125 (482)
Q Consensus        90 ~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~  125 (482)
T Consensus        99 gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~  132 (674)
T PRK13558         99 VDEDVARRAVDADATGLVPA--VSEDATAAIADRIE  132 (674)
T ss_pred             CCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf             85899999875163643344--71768999999999