HHsearch alignment for GI: 254780916 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.48 E-value=1.6e-14 Score=122.23 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=94.1
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 3899869989999999999988988999893--79999860899899997854698889999999985789839999268
Q gi|254780916|r 12 RVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 12 rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~ 89 (482)
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~~ 98 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPTA 98 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 99994688877752345666774212763238889865315898769965657888679999998613899988999567
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999988850574322222222222222222222
Q gi|254780916|r 90 DNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 90 ~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
T Consensus 99 gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~ 132 (674)
T PRK13558 99 VDEDVARRAVDADATGLVPA--VSEDATAAIADRIE 132 (674)
T ss_pred CCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf 85899999875163643344--71768999999999