HHsearch alignment for GI: 254780916 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=92.60 E-value=0.11 Score=31.60 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=79.1
Q ss_pred CEEEEEECCCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC-----CC-CCCCCC----CCCCC
Q ss_conf 204887327774367-99999984267543321012346554210024331125555-----32-211100----12344
Q gi|254780916|r 163 AIPIMIQGEFGVGKK-RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQ-----TK-NSAQFL----GKFIE 231 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~-~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~-----~~-~~~~~~----g~~~~ 231 (482)
T Consensus 127 ~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI------EDPIE-yvh~~~~sli~QREvG~DT~sF~~ALraALRe 199 (350)
T TIGR01420 127 RGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITI------EDPIE-YVHKNKRSLINQREVGLDTLSFANALRAALRE 199 (350)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE------ECCEE-EEECCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 993898768898678999999978740388882563------17731-41047702454362467545799997684102
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66714751664200188999888877642001123553212343156521-43321111112333799988654334467
Q gi|254780916|r 232 ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT-EKNLLPQVKSHVFRKDLYYRISVFLINIS 310 (482)
Q Consensus 232 a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t-~~~L~~~~~~g~fr~dLy~rL~~~~i~iP 310 (482)
T Consensus 200 -DPDvILiGE~RD~ET--~~~AL~AAETG---------------HLV~gTLHTn----sA~~ti~-----R----Iid~F 248 (350)
T TIGR01420 200 -DPDVILIGEMRDLET--VELALTAAETG---------------HLVFGTLHTN----SAAKTIE-----R----IIDVF 248 (350)
T ss_pred -CCCEEEEECCCCHHH--HHHHHHHHHHC---------------CHHHHHHHHH----HHHHHHH-----H----HHCCC
T ss_conf -898899825562789--99999874213---------------1567666642----3888767-----7----74259
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 787744222255667776410112233332-----------11111000122338986899999999
Q gi|254780916|r 311 TLRSRSEDIPWLVHFFLQSFCTKNAIKQIS-----------ISDKALSLLTKYPWIDNVQELKNILL 366 (482)
Q Consensus 311 pLReR~eDI~~L~~~fl~~~~~~~~~~~~~-----------ls~~a~~~L~~y~WPGNvREL~n~i~ 366 (482)
T Consensus 249 P~~~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~~Tpav~~lIre---~gk~~qi~~~i~ 312 (350)
T TIGR01420 249 PAEEQEQIRTQLAESLVAVISQRLLPKKNGGGRVLAVEILINTPAVRNLIRE---EGKTHQIKSVIQ 312 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCHHHHHHHCC---CCCHHHHHHHHH
T ss_conf 7756689999998767877000542233896258888752158789996028---788768999987