HHsearch alignment for GI: 254780916 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=91.68 E-value=0.081 Score=32.46 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=49.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEE--CCHHHH-HHHC-----CCCCEEEEECCCCCC---------------
Q ss_conf 28838998699899999999999889889998--937999-9860-----899899997854698---------------
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIV--NVSDLS-TISK-----IQVNVIFLSLINCED--------------- 65 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a--~~~al~-~l~~-----~~~dlillD~~mP~~--------------- 65 (482)
T Consensus 92 ~G~~L~~A~~DPtn~~a~~~i~F~tg~~ve~v~v~ed~l~~~i~~~y~~s~~~~~~~~~~d~g~~e~~d~~~~~~~~~~~ 171 (577)
T TIGR02538 92 RGNTLFVAVSDPTNISALDDIKFATGLNVEVVVVEEDKLSALIEKYYGESDSLAKELEDEDIGDLEELDVSAIDDEDPDS 171 (577)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58847999757545688999874149679999727289999999985344443321254202443321356432555556
Q ss_pred --CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf --8899999999857898399992689999999888505743222222222
Q gi|254780916|r 66 --DKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRK 114 (482)
Q Consensus 66 --dGlell~~i~~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~ 114 (482)
T Consensus 172 ~~~~~d~~~dmDqfnaDAPvvKFv----N~iL~DAir~GASDIHFEPYE~~ 218 (577)
T TIGR02538 172 EDEEEDAEDDMDQFNADAPVVKFV----NKILLDAIRKGASDIHFEPYEKK 218 (577)
T ss_pred CCCCCCCHHHHHHHCCCCCCHHHH----HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 554200013455423688701338----78799998468861211367687