>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..

Probab=98.23 E-value=9.4e-07 Score=67.37 Aligned_cols=217 Identities=15% Similarity=0.217 Sum_probs=151.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331 Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482) Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482) T Consensus 497 ~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~L---Gv~l~RFDMSEYmEKHTVsRLI 573 (774) T TIGR02639 497 AKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEEL---GVHLLRFDMSEYMEKHTVSRLI 573 (774) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH---CCHHCCCCCHHHHHHHHHHHHH T ss_conf 1315158999999999999874247788816888864798962578899999970---8200104650446899998741 Q ss_pred CCCC--------CC-CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEE Q ss_conf 1255--------55-3221110012344667147516642001889998888776420011235532123431---5652 Q gi|254780916|r 213 GDVD--------LQ-TKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFL 280 (482) Q Consensus 213 G~~~--------~~-~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~ 280 (482) T Consensus 574 GsPPGYVGfEqGGLLT~AvrK~-------P~cVLLLDEIEKAHpDI~NILLQVMD~At---LTDN~GrKaDFRNVILIMT 643 (774) T TIGR02639 574 GSPPGYVGFEQGGLLTDAVRKH-------PHCVLLLDEIEKAHPDIYNILLQVMDYAT---LTDNNGRKADFRNVILIMT 643 (774) T ss_pred CCCCCCCCCCCCCCCHHHHCCC-------CCEEEHHHHHHHHHHHHHHHHHHHHCCCE---EECCCCCEEEECCEEEEEC T ss_conf 6888851316777212233128-------85354234666631336667876633543---4058885763113688840 Q ss_pred CCCCCCCCCCHH-HHHHHHHH-HH--HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCCCCCCCC--CCCCC Q ss_conf 143321111112-33379998-86--5433446778774422-----------22556677764101122333--32111 Q gi|254780916|r 281 TEKNLLPQVKSH-VFRKDLYY-RI--SVFLINISTLRSRSED-----------IPWLVHFFLQSFCTKNAIKQ--ISISD 343 (482) Q Consensus 281 t~~~L~~~~~~g-~fr~dLy~-rL--~~~~i~iPpLReR~eD-----------I~~L~~~fl~~~~~~~~~~~--~~ls~ 343 (482) T Consensus 644 SNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~ 723 (774) T TIGR02639 644 SNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVELELTD 723 (774) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECH T ss_conf 37001023677644255541233488897315874201334644169988999999999999999975530653787647 Q ss_pred CCCCCCCCCCCCCC--HHHHHHHHHHHH Q ss_conf 11000122338986--899999999998 Q gi|254780916|r 344 KALSLLTKYPWIDN--VQELKNILLRAV 369 (482) Q Consensus 344 ~a~~~L~~y~WPGN--vREL~n~i~r~~ 369 (482) T Consensus 724 ~a~~~LA~KGY~~efGARpl~R~I~~~i 751 (774) T TIGR02639 724 DAIKYLAEKGYDEEFGARPLARVIQEEI 751 (774) T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 8999998636781105544899988741

HHsearch alignment for GI: 254780916 and conserved domain: TIGR02639