HHsearch alignment for GI: 254780916 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.74 E-value=9e-05 Score=53.35 Aligned_cols=189 Identities=16% Similarity=0.231 Sum_probs=115.8
Q ss_pred CCCCCCCCCC-CCCEEEEEECCCCCHHHHHH----HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 2222222234-43204887327774367999----999842675433210123465542100243311255553221110
Q gi|254780916|r 151 QVVDLARKAG-DCAIPIMIQGEFGVGKKRLS----RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF 225 (482)
Q Consensus 151 ~v~~~i~~~a-~~~~~vli~Ge~GtGK~~~A----~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~ 225 (482)
T Consensus 45 ~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~tr----ddlv-Gqy~Ght------aPkt 113 (284)
T TIGR02880 45 RLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV-GQYIGHT------APKT 113 (284)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEH----HHHH-HHHHCCC------CCHH
T ss_conf 999874221048832677516898724899999999998715400362678530----0131-1221257------7226
Q ss_pred CCCCCCCCCCEEEECCCCHHHH---------HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 0123446671475166420018---------8999888877642001123553212343156521433211111123337
Q gi|254780916|r 226 LGKFIEANGGTIVLEEPDALPL---------AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296 (482)
Q Consensus 226 ~g~~~~a~~Gtl~l~ei~~L~~---------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~ 296 (482)
T Consensus 114 ke~lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~r-----------~~lvvi~aGy~~----------rm 172 (284)
T TIGR02880 114 KEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-----------DDLVVILAGYKD----------RM 172 (284)
T ss_pred HHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-----------CCEEEEEECCHH----------HH
T ss_conf 899987428736642203321776410223799999999872365-----------537888717078----------88
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9998865-------433446778774422225566777641011223333211111000122338986899999999998
Q gi|254780916|r 297 DLYYRIS-------VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 297 dLy~rL~-------~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~ 369 (482)
T Consensus 173 ~~f~~snPG~~sr~a~h~~fPdy~--~~~l~~ia~~~l~~~~y~~~~~~~~~~~~y~~~r~~~P~f~nars~rna~dr~r 250 (284)
T TIGR02880 173 DSFFESNPGLSSRVAHHVDFPDYS--EEELLAIAELMLEEQQYRLSAEAEEALADYIALRRKQPFFANARSIRNALDRAR 250 (284)
T ss_pred HHHHHCCCCHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 887511786246776431588877--678999999988654121118899999999998631783146788999998898
Q ss_pred HHCC
Q ss_conf 7438
Q gi|254780916|r 370 IGLK 373 (482)
Q Consensus 370 i~~~ 373 (482)
T Consensus 251 lr~a 254 (284)
T TIGR02880 251 LRQA 254 (284)
T ss_pred HHHH
T ss_conf 8889