HHsearch alignment for GI: 254780916 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.24 E-value=2.6e-06 Score=64.27 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=102.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 432048873277743679999998----4267543321012346554210024331125555322111001234466714
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH----ESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH----~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt 236 (482)
T Consensus 40 ~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERAD---------LVGEYIGH-TAqk-TRe~~kkA~GGv 108 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERAD---------LVGEYIGH-TAQK-TREVIKKALGGV 108 (261)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC---------CCCCCCCC-HHHH-HHHHHHHHCCCC
T ss_conf 844787742786684389999999998533756788678876222---------12232030-0489-999999863880
Q ss_pred EEECCCCHHH--------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7516642001--------88999888877642001123553212343156521433211111123337999886543344
Q gi|254780916|r 237 IVLEEPDALP--------LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLIN 308 (482)
Q Consensus 237 l~l~ei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~ 308 (482)
T Consensus 109 LFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~-----------~lvlILA------------GY~~EM~yFL~~N--- 162 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRN-----------ELVLILA------------GYSDEMDYFLSLN--- 162 (261)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC-----------CEEEEEE------------CCHHHHHHHHHCC---
T ss_conf 0557777761488887662088899998761569-----------8689970------------8768999986207---
Q ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----CC-----CCCHHHHHHHHHHH
Q ss_conf 6778774-----------4222255667776410112233332111110001223----38-----98689999999999
Q gi|254780916|r 309 ISTLRSR-----------SEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY----PW-----IDNVQELKNILLRA 368 (482)
Q Consensus 309 iPpLReR-----------~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y----~W-----PGNvREL~n~i~r~ 368 (482)
T Consensus 163 -PGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~R-------eY~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~vRN~iE~A 234 (261)
T TIGR02881 163 -PGLRSRFPISIDFPDYTVEELMEIAERMVKER-------EYKLTEEAKWKLREHLAKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred -CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf -79777665054188998889999999998646-------4225788999999997412444210057620124288999
Q ss_pred HH
Q ss_conf 87
Q gi|254780916|r 369 VI 370 (482)
Q Consensus 369 ~i 370 (482)
T Consensus 235 IR 236 (261)
T TIGR02881 235 IR 236 (261)
T ss_pred HH
T ss_conf 99