HHsearch alignment for GI: 254780916 and conserved domain: TIGR02928
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.42 E-value=1.4e-07 Score=73.24 Aligned_cols=228 Identities=21% Similarity=0.257 Sum_probs=131.0
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCCCCCCC---CCEEEEEECCCCCHHHHHHHHH----HHCCCCCCCC-C--CCCCCCCC
Q ss_conf 111111--112222222222222222344---3204887327774367999999----8426754332-1--01234655
Q gi|254780916|r 135 EHCALD--SLIAVSPAMIQVVDLARKAGD---CAIPIMIQGEFGVGKKRLSRFI----HESGKRAFFP-F--FIVNCGMI 202 (482)
Q Consensus 135 ~~~~~~--~LiG~S~~m~~v~~~i~~~a~---~~~~vli~Ge~GtGK~~~A~~i----H~~s~r~~~~-f--i~v~c~~~ 202 (482)
T Consensus 10 ~dY~Pden~i~hRdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~ 89 (383)
T TIGR02928 10 PDYVPDENRIVHRDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQIL 89 (383)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 57702742466867899999999887506748987258878889878899999999999986226997158999778546
Q ss_pred CCC-C----CHHHH----HCCCCCCCCCCCCC----CC-CCCCCCCCE--EEECCCCHH--HHHHHH-----HHHHHHHH
Q ss_conf 421-0----02433----11255553221110----01-234466714--751664200--188999-----88887764
Q gi|254780916|r 203 DQD-K----IEKFL----FGDVDLQTKNSAQF----LG-KFIEANGGT--IVLEEPDAL--PLAVQG-----RIYNFIET 259 (482)
Q Consensus 203 ~~~-~----~e~~l----FG~~~~~~~~~~~~----~g-~~~~a~~Gt--l~l~ei~~L--~~~~Q~-----~Ll~~l~~ 259 (482)
T Consensus 90 ~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~-~d~PAyS~~LY~L~Ra 168 (383)
T TIGR02928 90 DTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKD-DDDPAYSKLLYQLSRA 168 (383)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCC-CCCHHHHHHHHHHHHH
T ss_conf 846999999999851577888898877878999999999983201887999862310221588-8880787885343310
Q ss_pred HHCCCCCCCCCCC-CCCEEEEECCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-
Q ss_conf 2001123553212-34315652143-----321111112333799988654334467787744-222255667776410-
Q gi|254780916|r 260 GKIEFFDSRGAIR-LDVRLIFLTEK-----NLLPQVKSHVFRKDLYYRISVFLINISTLRSRS-EDIPWLVHFFLQSFC- 331 (482)
Q Consensus 260 ~~~~~~g~~~~~~-~~~RiIa~t~~-----~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~-eDI~~L~~~fl~~~~- 331 (482)
T Consensus 169 ------~~~~~~~~~~vgvIgISND~~f~~~Ld~RVkSs---------L~~eei~FpPYdA~eL~~I-------L~~R~v 226 (383)
T TIGR02928 169 ------RENGDLENAKVGVIGISNDLKFRENLDPRVKSS---------LCEEEIVFPPYDAEELRDI-------LENRAV 226 (383)
T ss_pred ------HHCCCCCCCCEEEEEEECCCHHHHHCCCCEECC---------CCCCCCEECCCCHHHHHHH-------HHHHHH
T ss_conf ------003577885348999865714364457530132---------4874004079886999999-------972031
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHH---HCCCCCCCHHHHHHHH
Q ss_conf 11223333211111000122338--9868999999999987---4389810688954542
Q gi|254780916|r 332 TKNAIKQISISDKALSLLTKYPW--IDNVQELKNILLRAVI---GLKDSHLTEDRFVLLL 386 (482)
Q Consensus 332 ~~~~~~~~~ls~~a~~~L~~y~W--PGNvREL~n~i~r~~i---~~~~~~i~~~~~~~~l 386 (482)
T Consensus 227 ~~-AF~dGvl~d~VI~lcAA~aAq~hGDAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A~ 285 (383)
T TIGR02928 227 EK-AFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEEAQ 285 (383)
T ss_pred HH-CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 20-336885462279999998620678789999999987687531576310088899999