HHsearch alignment for GI: 254780916 and conserved domain: TIGR02974
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=100.00 E-value=0 Score=661.49 Aligned_cols=334 Identities=25% Similarity=0.355 Sum_probs=284.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CCCCC
Q ss_conf 12222222222222222344320488732777436799999984267543321012346554210024331125-55532
Q gi|254780916|r 142 LIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-DLQTK 220 (482)
Q Consensus 142 LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-~~~~~ 220 (482)
T Consensus 1 liG~S~aFL~vLeqvS~lA~l~rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFTG 80 (349)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFTG 80 (349)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 98872789999998751046788668861467468999988533246554886266101278255556653100100130
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 21110012344667147516642001889998888776420011235532123431565214332111111233379998
Q gi|254780916|r 221 NSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 (482)
Q Consensus 221 ~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~ 300 (482)
T Consensus 81 A~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN~DLP~lA~~G~FRaDLLD 160 (349)
T TIGR02974 81 AKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATNADLPALAAEGRFRADLLD 160 (349)
T ss_pred HCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCCCHHHH
T ss_conf 30468898544368873888871421676786612010130330178604773513676214136989865898401455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 86543344677877442222556677764101122333-32111110001223389868999999999987438981068
Q gi|254780916|r 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTE 379 (482)
Q Consensus 301 rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~-~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~ 379 (482)
T Consensus 161 RLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L~~Y~WPGNvRELkNvvERsVyR~~~~~~~i 240 (349)
T TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGREEAPI 240 (349)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 44565507978888723278999999999999707865511438999999706888852124446766653058766420
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------------HHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHH
Q ss_conf 8954542124454322343222222334443210------------00000001123444543-2589999999999999
Q gi|254780916|r 380 DRFVLLLSREGKKEREFHTETACTCYTEGKSSDT------------ILDNLSQESIPAIGQDG-EVRRLSDIEKEIIGLA 446 (482)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~l~e~E~~~I~~a 446 (482)
T Consensus 241 ~~i~~dPF~Spw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~dl~~~~~~~E~~ll~~A 320 (349)
T TIGR02974 241 EEIIIDPFASPWRRPQAAPAAAEVNSTPTDEPSPKESAPDVTTTQQVDTGTSSSSVPNASFPLDLKQAVQDYEIELLQQA 320 (349)
T ss_pred HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 12010778888887766643334444444432233345655202433202553101232168768999999999999999
Q ss_pred HHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99828727899978489988999999981
Q gi|254780916|r 447 MKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 447 L~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
T Consensus 321 L~~~~fNQr~AAe~LGLtYHQlRg~LkKy 349 (349)
T TIGR02974 321 LAEAQFNQRKAAELLGLTYHQLRGLLKKY 349 (349)
T ss_pred HHHHCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 98730347899987257368999863149