HHsearch alignment for GI: 254780916 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.11 E-value=4.1e-06 Score=62.81 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCC
Q ss_conf 1111111122222222222222223443204887327774367999999842675-------433210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-------AFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-------~~~~fi~v~c~~~~~~~~ 207 (482)
T Consensus 182 ~~gklDPvIGRd~EI~r~iqIL~R--r~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~L----- 254 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR--RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----- 254 (852)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHH-----
T ss_conf 839999886949999999999986--2479974657999879999999999997699986774385678678888-----
Q ss_pred HHHHHCCCCCCCCCCCCCC-CCCCC---CCC-CEEEECCCCHHH--------HHHHHHHHH-HHHHHHCCCCCCCCCCCC
Q ss_conf 2433112555532211100-12344---667-147516642001--------889998888-776420011235532123
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-GKFIE---ANG-GTIVLEEPDALP--------LAVQGRIYN-FIETGKIEFFDSRGAIRL 273 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g~~~~---a~~-Gtl~l~ei~~L~--------~~~Q~~Ll~-~l~~~~~~~~g~~~~~~~ 273 (482)
T Consensus 255 ---vAGtk--yRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~Da-aNiLKPaLarG------------- 315 (852)
T TIGR03345 255 ---QAGAS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDA-ANLLKPALARG------------- 315 (852)
T ss_pred ---HHCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCH-HHHHHHHHHCC-------------
T ss_conf ---64035--763599999999999984899769996348775289988886227-88751787378-------------
Q ss_pred CCEEEEECCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCCCC
Q ss_conf 43156521433211111123337--99988654334467787744222255667776---------------41011223
Q gi|254780916|r 274 DVRLIFLTEKNLLPQVKSHVFRK--DLYYRISVFLINISTLRSRSEDIPWLVHFFLQ---------------SFCTKNAI 336 (482)
Q Consensus 274 ~~RiIa~t~~~L~~~~~~g~fr~--dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~---------------~~~~~~~~ 336 (482)
T Consensus 316 elr~IGATT~~EY----rk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI- 390 (852)
T TIGR03345 316 ELRTIAATTWAEY----KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI- 390 (852)
T ss_pred CCEEEEECCHHHH----HHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHC-
T ss_conf 7349983578999----88864268899624755279998799999999879998554796870899999999987215-
Q ss_pred CCCCCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHH
Q ss_conf 3332111110001---------22338986899999999998
Q gi|254780916|r 337 KQISISDKALSLL---------TKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 337 ~~~~ls~~a~~~L---------~~y~WPGNvREL~n~i~r~~ 369 (482)
T Consensus 391 ~dR~LPDKAIDLlDeA~A~~~~~~~~~p~~l~~~~~~~~~~~ 432 (852)
T TIGR03345 391 PGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALE 432 (852)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 545584278999999999999860489568999999999999