HHsearch alignment for GI: 254780916 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.84 E-value=2.2e-08 Score=78.82 Aligned_cols=208 Identities=14% Similarity=0.128 Sum_probs=122.3
Q ss_pred CCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22111111112-2222-222222222223443204887327774367999999842675433210123465542100243
Q gi|254780916|r 133 ENEHCALDSLI-AVSP-AMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKF 210 (482)
Q Consensus 133 ~~~~~~~~~Li-G~S~-~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~ 210 (482)
T Consensus 8 l~~~~tfdnFi~~~N~~~~~~l~~~~~~--~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~-- 83 (226)
T TIGR03420 8 LPDDPTFDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPE-- 83 (226)
T ss_pred CCCCCCHHCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH--
T ss_conf 9998763123658679999999987646--688869998999998899999999998626995799529998775399--
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 311255553221110012344667147516642001--889998888776420011235532123431565214332111
Q gi|254780916|r 211 LFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 211 lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
T Consensus 84 ~l--------------~~l~--~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~----------~~~~~ilits~~~p~~l 137 (226)
T TIGR03420 84 VL--------------EGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL 137 (226)
T ss_pred HH--------------HHCC--CCCEEEEECHHHHCCCHHHHHHHHHHHHHHH----------HHCCEEEEECCCCHHHC
T ss_conf 99--------------7274--4899999663334378378999999999998----------65282898678882320
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1112333799988654-334467787744222255667776410112233332111110001223389868999999999
Q gi|254780916|r 289 VKSHVFRKDLYYRISV-FLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLR 367 (482)
Q Consensus 289 ~~~g~fr~dLy~rL~~-~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r 367 (482)
T Consensus 138 ~---~~l~dL~SRl~~~~~~~I~~pdd--~~~~~i----L~k~~~~r~---i~i~~~vi~yl~~r-~~R~~~~l~~~l~~ 204 (226)
T TIGR03420 138 P---LRLPDLRTRLAWGLVFQLPPLSD--EEKIAA----LQSRAARRG---LQLPDEVADYLLRH-GSRDMGSLMALLDA 204 (226)
T ss_pred C---CCHHHHHHHHHCCCEEECCCCCH--HHHHHH----HHHHHHHCC---CCCCHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_conf 3---20177999996885685279999--999999----999999859---98899999999986-37989999999999
Q ss_pred HHH--HCCCCCCCHHHHH
Q ss_conf 987--4389810688954
Q gi|254780916|r 368 AVI--GLKDSHLTEDRFV 383 (482)
Q Consensus 368 ~~i--~~~~~~i~~~~~~ 383 (482)
T Consensus 205 Ld~~sl~~kr~ITi~l~k 222 (226)
T TIGR03420 205 LDRASLAAKRKITIPFVK 222 (226)
T ss_pred HHHHHHHHCCCCCHHHHH
T ss_conf 999999808999999999