HHsearch alignment for GI: 254780916 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.45 E-value=0.071 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=19.9
Q ss_pred EEEEECCCCCHHHHHHHH-HHHCCCCCCCCCC
Q ss_conf 488732777436799999-9842675433210
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRF-IHESGKRAFFPFF 195 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~-iH~~s~r~~~~fi 195 (482)
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~-a~~ge~~l 31 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG-LARGEPGL 31 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHH-HHCCCCEE
T ss_conf 91587689999999999999999-87699789