HHsearch alignment for GI: 254780916 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.23 E-value=0.02 Score=36.73 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 222222222344320488732777436799999984267543321012
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
T Consensus 12 ~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~-~rivti 58 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITI 58 (186)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEE
T ss_conf 99999999999859989998999998999999999613345-645984