HHsearch alignment for GI: 254780916 and conserved domain: cd02067
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.93 E-value=1.3 Score=23.92 Aligned_cols=89 Identities=10% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCEEEEECC----HH-HHHHHCCCCCEEEEECCCCCC-CHH-HHHHHHHHHC-CCCCEEEEECCCCHH
Q ss_conf 999999999988988999893----79-999860899899997854698-889-9999999857-898399992689999
Q gi|254780916|r 22 QIKIIKDHVESYGYDVFIVNV----SD-LSTISKIQVNVIFLSLINCED-DKE-NILKNIVDKI-PIVPIIVQTTQDNIK 93 (482)
Q Consensus 22 ~~~~l~~~L~~~G~~v~~a~~----~a-l~~l~~~~~dlillD~~mP~~-dGl-ell~~i~~~~-p~ipvIiiT~~~~~~ 93 (482)
T Consensus 15 G~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~~~~~i~~l~~~g~~~i~-v~vGG~~~~~ 93 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIP-VLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCE-EEEECCCCCH
T ss_conf 999999999978998998999999999999999709999999622024268999999999976999985-9998998974
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 999888505743222222
Q gi|254780916|r 94 ILNCFLYNRISKFFLNLV 111 (482)
Q Consensus 94 ~~~~a~~~g~~d~l~KP~ 111 (482)
T Consensus 94 ~~~~~~~~Gad~~~~~a~ 111 (119)
T cd02067 94 DFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred HHHHHHHCCCCEEECCHH
T ss_conf 399999869979977807