HHsearch alignment for GI: 254780916 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=92.28 E-value=0.96 Score=24.88 Aligned_cols=116 Identities=12% Similarity=0.192 Sum_probs=54.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 88732777436799999984267543321012346554210024331---125555322111001234466714751664
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTIVLEEP 242 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei 242 (482)
T Consensus 2 il~lG~~~~GKTsll~~~~~~~~~~~~pTig~~~~~i~~~~~~~~iwD~~G~e~~----r~~~~~y~~~~~~ii~VvD~s 77 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSI----RPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC----CHHHHHHCCCCCEEEEEEECC
T ss_conf 9999999998999999997099677578488246999989889999967986244----627887466788999997457
Q ss_pred CHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 200188-9998888776420011235532123431565214332111111233
Q gi|254780916|r 243 DALPLA-VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 243 ~~L~~~-~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
T Consensus 78 d~~~~~~~~~~l~~~l~~~~~------~~~p---iliv~NK~Dl~~~~~~~~i 121 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEEL------KGAV---LLVFANKQDMPGALSEAEI 121 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHHH------CCCC---EEEEEECCCCCCCCCHHHH
T ss_conf 878999999999999834653------6981---9999976677657799999