HHsearch alignment for GI: 254780916 and conserved domain: cd04155
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.94 E-value=1 Score=24.62 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 43204887327774367999999842675433210123465542100243311255553221110012344667147516
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
T Consensus 12 ~~~~Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g~~~~~v~~~~~~~~lwD-~~G~~~~~~~~~~y~~~a~~iI~VvD 90 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWD-IGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEE-CCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 87758999979999889999998569986606811323799998999999985-58751012689976555637999996
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 6420018-8999888877642001123553212343156521433211111123337
Q gi|254780916|r 241 EPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296 (482)
Q Consensus 241 ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~ 296 (482)
T Consensus 91 ~td~~~~~~~~~~l~~~l~~~~------~~~~P---iLiv~NK~Dl~~a~~~~eI~~ 138 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEK------LAGVP---VLVFANKQDLATAAPAEEIAE 138 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH------CCCCC---EEEEEECCCCCCCCCHHHHHH
T ss_conf 6756889999999999974130------06983---899997666777899999999