HHsearch alignment for GI: 254780916 and conserved domain: cd04156

>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=91.17  E-value=1.3  Score=24.07  Aligned_cols=112  Identities=13%  Similarity=0.221  Sum_probs=52.2

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf             8873277743679999998426754332101234655421-0024331---12555532211100123446671475166
Q gi|254780916|r  166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD-KIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTIVLEE  241 (482)
Q Consensus       166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~-~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl~l~e  241 (482)
T Consensus         2 ivilG~~~~GKTsil~r~~~~~~~~~~pTig~~~~~~~~~~~~~l~iwD~~G~e~~----~~~~~~y~~~a~~iI~V~D~   77 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKM----RTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCC----CHHHHHHHCCCCEEEEEEEC
T ss_conf             99999999999999999956987775776150389999899899999978986247----41588774567789999856


Q ss_pred             CCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             420018-8999888877642001123553212343156521433211111
Q gi|254780916|r  242 PDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK  290 (482)
Q Consensus       242 i~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~  290 (482)
T Consensus        78 td~~~~~~~~~~~~~~l~~~~------~~~~p---ili~~NK~Dl~~~~~  118 (160)
T cd04156          78 SDEARLDESQKELKHILKNEH------IKGVP---VVLLANKQDLPGALT  118 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHHHC------CCCCE---EEEEEECCCCCCCCC
T ss_conf             867887879999999986635------37874---999998633656679